Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq46223 172 9e-41 seq46217 158 2e-36 seq1648 156 7e-36 seq46233 138 2e-30 >seq46223 Length=1214 Score = 172 bits (190), Expect = 9e-41 Identities = 196/260 (75%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| || || Sbjct 314 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGCTTTT--CA- 370 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 371 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 429 Query 137 TCAAATTTCCTA-CGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| |||| | | | | |||||| ||| ||||||||| ||||||||| ||||| Sbjct 430 TCATTTTTCAAAACATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCC 489 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 490 AACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAG 549 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 550 GATGTGATGAGTCGACATCG 569 >seq46217 Length=430 Score = 158 bits (174), Expect = 2e-36 Identities = 185/247 (75%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| || || Sbjct 243 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGCTTTT--CA- 187 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 186 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 128 Query 137 TCAAATTTCCTA-CGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| |||| | | | | |||||| ||| ||||||||| ||||||||| ||||| Sbjct 127 TCATTTTTCAAAACATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCC 68 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 67 AACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAG 8 Query 256 GATGAGA 262 |||| || Sbjct 7 GATGTGA 1 >seq1648 Length=296 Score = 156 bits (172), Expect = 7e-36 Identities = 176/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 46 AAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCAT 105 ||| |||||| | | || |||| || || ||||| | | |||||||| ||| || | Sbjct 16 AAATTTAGCTACTCGGCGATGCTTTT--CA--ACAACCGATACACCAGAGATTTACCCTT 71 Query 106 CCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTA-CGCCCACGACGGATAG 164 | |||||||||||||||| | || | || ||| |||| | | | | ||||| Sbjct 72 CTCGGTCCTCTCGTACTAGAGTTAGATTCTTTCATTTTTCAAAACATCTATAGAAGATAG 131 Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224 | ||| ||||||||| ||||||||| |||||| ||| ||| || ||||||| |||||||| Sbjct 132 GAACCAAACTGTCTCACGACGTTCTAAACCCA-CTCACGTACCACTTTAATCGGCGAACA 190 Query 225 GCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||||||| |||| ||||||| |||||||| || ||| |||||||| Sbjct 191 GCCGAACCCTTGGAACCTTCTTCAGCTCCAGGATGTGATGAGTCGACATCG 241 >seq46233 Length=1259 Score = 138 bits (152), Expect = 2e-30 Identities = 100/116 (86%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| ||| ||||||||| ||||||||| |||||| ||| ||| || ||||||| ||| Sbjct 22 GATAGGAACCAAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATCGGC 81 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||| ||||||||| |||| ||||||| |||||||| || ||| |||||||| Sbjct 82 GAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAGGATGTGATGAGTCGACATCG 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780450089360