Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq46232 116 9e-24 seq46228 116 9e-24 seq19975 93.3 1e-16 >seq46232 Length=3510 Score = 116 bits (128), Expect = 9e-24 Identities = 116/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | |||||| ||| ||| ||| || |||| |||| |||| ||| || Sbjct 1142 CTTTACAACCTAATTAGCCTTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 1201 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 1202 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 1260 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||||||| |||| || ||| |||||||| Sbjct 1261 GTGGCTGATCATTCTTTCAAACCAGCTA 1288 >seq46228 Length=739 Score = 116 bits (128), Expect = 9e-24 Identities = 116/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | |||||| ||| ||| ||| || |||| |||| |||| ||| || Sbjct 337 CTTTACAACCTAATTAGCCTTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 396 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 397 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 455 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||||||| |||| || ||| |||||||| Sbjct 456 GTGGCTGATCATTCTTTCAAACCAGCTA 483 >seq19975 Length=892 Score = 93.3 bits (102), Expect = 1e-16 Identities = 82/102 (80%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 49 CAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 108 || |||| ||| |||||| ||| ||||||||||||||||| | ||| ||| |||| Sbjct 103 CAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCTGCCTTA---AAAAGTTTGGGCCGT 47 Query 109 GTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 |||||||| ||| |||||||| |||| || ||| |||||||| Sbjct 46 GTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTA 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221834517760