Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq46232 235 2e-59 seq46228 235 2e-59 seq40575 143 8e-32 seq38468 116 1e-23 seq19975 86.0 2e-14 >seq46232 Length=3510 Score = 235 bits (260), Expect = 2e-59 Identities = 259/337 (77%), Gaps = 7/337 (2%) Strand=Plus/Minus Query 167 GATTA-GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 ||||| | ||||||||| ||| | ||| ||| | | ||| |||| | ||| | Sbjct 1334 GATTATGGTAGTTGGTAGTTTAAAAGACTACAAAGCCTATTATCTTTAGCTGGTTTGAAA 1275 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 | ||||| |||||||||| |||||||||||| ||||||| | |||||||||||| Sbjct 1274 GAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAGCAGTGG 1216 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-C 344 ||||| ||| |||||| || ||||| |||| |||||| ||| ||||| ||||||||| Sbjct 1215 GGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCGAGTGAGTGATGAAGGCTA 1156 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404 | ||| |||||||||| || | ||||| || |||||| |||||| | | |||| || Sbjct 1155 ATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGAAGTTCC 1096 Query 405 GGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||| || |||||||||||||||||||||||| || || ||| |||| |||||| Sbjct 1095 GGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCGGAATG 1037 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | | |||||||||||| ||||||||||| |||||| Sbjct 1036 A-TTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGT 1001 >seq46228 Length=739 Score = 235 bits (260), Expect = 2e-59 Identities = 259/337 (77%), Gaps = 7/337 (2%) Strand=Plus/Minus Query 167 GATTA-GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 ||||| | ||||||||| ||| | ||| ||| | | ||| |||| | ||| | Sbjct 529 GATTATGGTAGTTGGTAGTTTAAAAGACTACAAAGCCTATTATCTTTAGCTGGTTTGAAA 470 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 | ||||| |||||||||| |||||||||||| ||||||| | |||||||||||| Sbjct 469 GAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAGCAGTGG 411 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-C 344 ||||| ||| |||||| || ||||| |||| |||||| ||| ||||| ||||||||| Sbjct 410 GGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCGAGTGAGTGATGAAGGCTA 351 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404 | ||| |||||||||| || | ||||| || |||||| |||||| | | |||| || Sbjct 350 ATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGAAGTTCC 291 Query 405 GGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||| || |||||||||||||||||||||||| || || ||| |||| |||||| Sbjct 290 GGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCGGAATG 232 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | | |||||||||||| ||||||||||| |||||| Sbjct 231 A-TTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGT 196 >seq40575 Length=5145 Score = 143 bits (158), Expect = 8e-32 Identities = 163/212 (77%), Gaps = 19/212 (9%) Strand=Plus/Plus Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| ||| |||||| || |||| |||| |||||| ||| ||||| |||||| Sbjct 3818 AGTGGGGAATTTTGGACAATGAGCGGAAGCTTGATCCAGCAATACCGAGTGAGTGATGAA 3877 Query 341 GGCCT-TCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAA 399 ||| | ||| |||||||||| || | ||||| || |||||| |||||| | | ||| Sbjct 3878 GGCTAATAAGGTTGTAAAGCTCTTTCAT-AAGGAGGAAAATGACAGTACTTAA--AAGAA 3934 Query 400 GCCCCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 | |||||||| ||| ||||||||||||||||||||||| |||| ||||| || Sbjct 3935 GTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGAGGG----AGCGTAAT--- 3986 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 |||| |||||||||||| |||||||| Sbjct 3987 -GATTA----GGCGTAAAGGGTTTGTAGGTGG 4013 >seq38468 Length=3367 Score = 116 bits (128), Expect = 1e-23 Identities = 157/212 (74%), Gaps = 25/212 (12%) Strand=Plus/Plus Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| ||| |||||| || |||| |||| |||||| ||| ||||| |||||| Sbjct 2510 AGTGGGGAATTTTGGACAATGAGCGGAAGCTTGATCCAGCAATACCGAGTGAGTGATGAA 2569 Query 341 GGCCT-TCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAA 399 ||| | ||| |||||||||| || | ||||| || |||||| |||||| | | ||| Sbjct 2570 GGCTAATAAGGTTGTAAAGCTCTTTCAT-AAGGAGGAAAATGACAGTACTTAA--AAGAA 2626 Query 400 GCCCCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 | |||||||| ||| |||||||||||||| ||| |||| ||||| || Sbjct 2627 GTTCCGGCTAA-TACCCGTGCCAGCAGCCGC------ACGGAGGG----AGCGTAATG-- 2673 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 |||| |||||||||||| |||||||| Sbjct 2674 --ATTA----GGCGTAAAGGGTTTGTAGGTGG 2699 >seq19975 Length=892 Score = 86.0 bits (94), Expect = 2e-14 Identities = 75/93 (81%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||| || ||||| |||||||||| |||||||||||| ||||||| | ||||||| Sbjct 14 TGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTT---TAAGGCAGC 70 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTG 313 |||||||||| ||| |||||| || ||||| || Sbjct 71 AGTGGGGAATTTTGGACAATGAGCGAAAGCTTG 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496907210240