Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq45402 255 1e-65 seq35718 251 1e-64 seq21657 251 1e-64 seq14081 248 2e-63 seq33427 138 2e-30 seq2542 132 9e-29 seq42903 96.9 7e-18 seq26116 95.1 2e-17 >seq45402 Length=31084 Score = 255 bits (282), Expect = 1e-65 Identities = 213/260 (82%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| |||| ||||||| |||||||||||||||||| Sbjct 10075 CTTCTTAGAGGGACTTTTGGGTAATCAAACCGAAGGAAGTTGGAGGCAATAACAGGTCTG 10134 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||||||||| |||||||||||||||||||||||||| |||||||| || Sbjct 10135 TGATGCCCTTAGATGCTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATAT 10194 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| || |||||||||||||||||| || ||||||| |||||| | | Sbjct 10195 AACCTTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGTGCTAGGGATATACTGT 10254 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | |||| |||||||||| |||||||| ||| ||||||||| || |||| Sbjct 10255 TGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGA 10314 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 10315 TTACGTCCCTGCCCTTTGTA 10334 >seq35718 Length=2485 Score = 251 bits (278), Expect = 1e-64 Identities = 212/260 (82%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | ||||||| |||||||||||||||||| Sbjct 763 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTG 822 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||||||||||||||||||||||| |||||||||||| |||||||| | Sbjct 823 TGATGCCCTTAGATGTTCTGGGCCGCACGGGCGCTACACTGATGCGTTCAACGAGTATAC 882 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| || |||||||||||||||||| || ||||||| |||||||| | Sbjct 883 AACCTTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGT 942 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | |||| |||||||||| |||||||| ||| ||||||||| || |||| Sbjct 943 TGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGA 1002 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 1003 TTACGTCCCTGCCCTTTGTA 1022 >seq21657 Length=965 Score = 251 bits (278), Expect = 1e-64 Identities = 212/260 (82%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||| |||||| | || | ||| || | ||||||| |||||||||||||||||| Sbjct 878 CTTCTTAGTGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTG 819 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 818 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATAC 759 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| || |||||||||||||||||| || ||||||| |||||||| | Sbjct 758 AACCTTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGT 699 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | |||| |||||||||| |||||||| ||| ||||||||| || |||| Sbjct 698 TGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGA 639 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 638 TTACGTCCCTGCCCTTTGTA 619 >seq14081 Length=559 Score = 248 bits (274), Expect = 2e-63 Identities = 219/273 (80%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 56 TTTGGCGGGTCGCCGGCTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGA 112 ||||| || | | | ||||||||||||||| | || | ||| || | ||||||| || Sbjct 285 TTTGGAGGTTTGTGGACTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGA 344 Query 113 GGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACA 172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 345 GGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATG 404 Query 173 GAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT 232 |||||||| | |||||| || |||||||||||||||||| || |||| Sbjct 405 CGTTCAACGAGTATACAACCTTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGT 464 Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 ||| |||||||| |||||||| | |||| |||||||||| |||||||| ||| || Sbjct 465 GCTAGGGATAGACTGTTGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAACGCAAGT 524 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTT 325 ||||||| || |||||||||||||||||| || Sbjct 525 CATCAGCTTGCATTGATTACGTCCCTGCCCCTT 557 >seq33427 Length=2051 Score = 138 bits (152), Expect = 2e-30 Identities = 92/102 (90%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | ||||||| |||||||||||||||||| Sbjct 140 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTG 81 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||||||||||||||||||||||||||||||||| Sbjct 80 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 39 >seq2542 Length=338 Score = 132 bits (146), Expect = 9e-29 Identities = 138/179 (77%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| |||||||| | ||| Sbjct 338 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATACAACC 279 Query 193 TTGGCCGGAAGGTCTGGGTAA-TCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG- 250 ||| || |||||||||||| |||||| || ||||||| |||||||| ||| Sbjct 278 TTGATCGATAGGTCTGGGTAAGTCTTGTGAATGCGCATCGTGCTAGGGATAGACTGTTGT 219 Query 251 -CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||| | |||| |||||||||| |||||||| ||| ||||||||| || |||| Sbjct 218 CAAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGA 160 >seq42903 Length=10335 Score = 96.9 bits (106), Expect = 7e-18 Identities = 78/93 (84%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 237 GGGATAGAGCATTGCAATTATTGC-TCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCAT 295 |||||||| |||||||| || |||| |||||||||| |||||||| ||| ||||| Sbjct 2194 GGGATAGACTGTTGCAATTTTTCAGTCTTGAACGAGGAATTCCTAGTAAACGCAAGTCAT 2253 Query 296 CAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| || |||||||||||||||||||||||| Sbjct 2254 CAGCTTGCATTGATTACGTCCCTGCCCTTTGTA 2286 >seq26116 Length=1118 Score = 95.1 bits (104), Expect = 2e-17 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | ||||||| |||||||||||||||||| Sbjct 78 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTG 19 Query 129 TGATGCCCTTAGATGTTC 146 |||||||||||||||||| Sbjct 18 TGATGCCCTTAGATGTTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946761825280