Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq46233 187 8e-45 seq46223 179 1e-42 seq45880 129 2e-27 >seq46233 Length=1259 Score = 187 bits (206), Expect = 8e-45 Identities = 335/490 (68%), Gaps = 32/490 (7%) Strand=Plus/Plus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 349 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 407 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 ||||||| || | || |||| ||| | || | |||||||| Sbjct 408 TACACTGTCT---------ATT-TAAAAAAATATTAGTTATTTATTATAATAAGAGTGGT 457 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCT 254 ||||||| | || |||| |||||||| | | || | |||| ||| || Sbjct 458 ATTTCAAGGATATCTAAACAATTTACTAGCGTAAAGATCTAAAAGATTACCACTTATGCT 517 Query 255 ACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGT 313 |||| | | ||| ||||| ||| | |||| ||||| | |||||||||| ||| Sbjct 518 ACACGTATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTCCGT 577 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAG 373 | | ||| ||||||| || || | ||| ||||| | | || | | ||| Sbjct 578 CTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAG 637 Query 374 ACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 ||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 638 ACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCG 697 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCA 493 ||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 698 CTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT---------- 747 Query 494 CACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTC 553 | || || || |||| |||| |||||||||||||||||| ||||| | Sbjct 748 ---------TAATGCGCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGAC 798 Query 554 CGTATACCTC 563 | ||||| || Sbjct 799 CCTATACATC 808 >seq46223 Length=1214 Score = 179 bits (198), Expect = 1e-42 Identities = 288/410 (70%), Gaps = 13/410 (3%) Strand=Plus/Plus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 781 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 839 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 ||||||| || | || |||| ||| | || | |||||||| Sbjct 840 TACACTGTCT---------ATT-TAAAAAAATATTAGTTATTTATTATAATAAGAGTGGT 889 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCT 254 ||||||| | || |||| |||||||| | | || | |||| ||| || Sbjct 890 ATTTCAAGGATATCTAAACAATTTACTAGCGTAAAGATCTAAAAGATTACCACTTATGCT 949 Query 255 ACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGT 313 |||| | | ||| ||||| ||| | |||| ||||| | |||||||||| ||| Sbjct 950 ACACGTATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTCCGT 1009 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAG 373 | | ||| ||||||| || || | ||| ||||| | | || | | ||| Sbjct 1010 CTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAG 1069 Query 374 ACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 ||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 1070 ACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCG 1129 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 ||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 1130 CTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT 1179 >seq45880 Length=47478 Score = 129 bits (142), Expect = 2e-27 Identities = 133/179 (74%), Gaps = 19/179 (11%) Strand=Plus/Plus Query 385 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 |||||||| |||||| |||||||||||||||||||||||| |||||||||||||||| || Sbjct 22560 GTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAACGAATTTCGCTACCTTATGA 22619 Query 445 TGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTG 504 || | ||||| |||||||||||||||| |||| || | Sbjct 22620 CCGTCAGAGTTATGACCGCCGTTTACTGGGACTTCCGTT-------------------TA 22660 Query 505 GTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||| | || |||| |||| |||||||||||||||||| ||||| || ||||| || Sbjct 22661 GTGCACAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATC 22719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701612469760