Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq45402 331 3e-88 seq2612 273 7e-71 seq2470 226 9e-57 seq4099 208 2e-51 seq1160 165 2e-38 seq36325 82.4 2e-13 >seq45402 Length=31084 Score = 331 bits (366), Expect = 3e-88 Identities = 327/414 (79%), Gaps = 19/414 (5%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||||||||||||||||| Sbjct 9196 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 9138 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| ||||| ||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 9137 TCCCTGTGTCAAGATTGGGTAATTTACGCTCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 9078 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||| ||||||||||||||||||| |||||||||||||||||||||||| || ||||||| Sbjct 9077 TTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAATGCCATGGT 9018 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| |||||||||||| |||| |||||||||||||| | | || ||||| || Sbjct 9017 AGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGATTTATCGC--GC 8960 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC--CCCGAAG--GGC 294 ||| ||||| || ||||||||||| ||| || | | | ||||||| || Sbjct 8959 AAAAG----CGCGATCCGCATAGTTATTATGACTCAACACAATACCAGCCCGAAGACTGC 8904 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGT 349 |||| ||| ||||||||||| | ||| |||| ||| ||| || |||||| Sbjct 8903 ATTGG-TTTCAATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTGATGCATGT 8845 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 ||||||| ||||||||| |||| ||| || |||||||||||||||| | || || Sbjct 8844 ATTAGCTTTAGAATTACTACGGGTATTCAAGTAGTAAGGTACTATCGAGTACAC 8791 Score = 149 bits (164), Expect = 2e-33 Identities = 98/107 (92%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTT 457 || || ||||||||| ||||||||||||||||||||||| ||| | | ||| |||||||| Sbjct 8247 TAGACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAATTGTTTATACTT 8188 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 8187 AGACATGCATGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 8141 >seq2612 Length=342 Score = 273 bits (302), Expect = 7e-71 Identities = 275/349 (79%), Gaps = 19/349 (5%) Strand=Plus/Minus Query 160 TTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAAT 219 || |||||| || |||||||||||| |||||||||||| |||| |||||||||||||| Sbjct 342 TTCCCCGTTAATGCCATGGTAGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAAC 283 Query 220 TTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA- 278 | | || ||||| || ||| ||||| || ||||||||||| ||| || Sbjct 282 TCAATCGATTTATCGC--GCAAAAGC----GCGATCCGCACAGTTATTATGACTCAACAC 229 Query 279 AGGAGC--CCCGAAGG--GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGA----- 329 | | | ||||||| || ||||||| ||||||||||| | ||| |||| Sbjct 228 AATACCAGCCCGAAGACTGCATTGGTTTCA-ATCTAATAAATGCTACCCGCCCGACAAGC 170 Query 330 AGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT 389 ||| ||| || ||||||||||||||||||||||| |||| |||||| |||||||||| Sbjct 169 AGTTGGGTATTGATGCATGTATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGT 110 Query 390 ACTATCAAATAAACGATAACTGAT-TTAATGAGCCATTCGCAGTTTCACTGTA-TAGATT 447 |||||| | || || ||||||||| | |||||||||||||||||||||| ||| | ||| Sbjct 109 ACTATCGAGTAGACTATAACTGATATAAATGAGCCATTCGCAGTTTCACAGTACAAAATT 50 Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACT 496 | ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 49 GTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCGTATGACT 1 >seq2470 Length=335 Score = 226 bits (250), Expect = 9e-57 Identities = 155/172 (90%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 335 GGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA 393 ||| ||| | ||||||||||||||||||||||| |||| |||||| |||||||||||||| Sbjct 284 GGGATTTGATGCATGTATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTA 225 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTA 452 || | || || ||||||||| ||||||||||||||||||||||| ||| | |||| ||| Sbjct 224 TCGAGTAGACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAATTGTTTA 165 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 164 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 113 >seq4099 Length=406 Score = 208 bits (230), Expect = 2e-51 Identities = 138/152 (91%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGAT 413 ||||||||||||| |||| |||||| |||||||||||||||| | || || ||||||||| Sbjct 397 GCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTATCGAGTAGACTATAACTGAT 338 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTT 472 ||||||||||||||||||||||| ||| | |||| ||||||||||||||||||||||| Sbjct 337 ATAATGAGCCATTCGCAGTTTCACAGTACAAAATTGTTTATACTTAGACATGCATGGCTT 278 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||| ||||||||||||||| Sbjct 277 AATCTTTGAGACAAGCGTATGACTACTGGCAG 246 >seq1160 Length=270 Score = 165 bits (182), Expect = 2e-38 Identities = 194/255 (76%), Gaps = 18/255 (7%) Strand=Plus/Minus Query 110 TGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTG 169 |||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 247 TGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCC-GTTACCCGTTA 189 Query 170 ATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAAC 229 || |||||||||||| |||||||||||| |||| |||||||||||||| | | || Sbjct 188 ATGCCATGGTAGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGATT 129 Query 230 CATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC--CC 286 ||||| || ||| ||||| || ||||||||||| ||| || | | | || Sbjct 128 TATCGC--GCAAAAG----CGCGATCCGCACAGTTATTATGACTCAACACAATACCAGCC 75 Query 287 CGAAG--GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTT 339 ||||| || |||| ||| ||||||||||| | ||| |||| ||| ||| | Sbjct 74 CGAAGACTGCATTGG-TTTCAATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTAT 16 Query 340 TTTAGCATGTATTAG 354 | ||||||||||| Sbjct 15 TGATGCATGTATTAG 1 >seq36325 Length=2624 Score = 82.4 bits (90), Expect = 2e-13 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGC 97 ||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||| Sbjct 394 TATTTATTGTCACTACCTCCCTGTGTCAGGATTGGGTAATTTACGCGCCTACTGC 448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509701288960