Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq45717 251 6e-62 seq46202 197 1e-45 seq46075 168 5e-37 >seq45717 Length=39516 Score = 251 bits (278), Expect = 6e-62 Identities = 887/1375 (65%), Gaps = 43/1375 (3%) Strand=Plus/Minus Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 ||||||||| | ||| || |||||| || |||||||||||| || || | || || Sbjct 4880 GAACTCGCCAGCCAGCACGCGACGGTTGTACATGTTGGACGTGTACGGCTCGATAGACTC 4821 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 ||||||| || |||||||| || || || || |||||||| || |||| || ||||| Sbjct 4820 GTTGTTGCCCAGGATTTGGGCCGTGGAGGCTGTGGGCATGGGGGCAACCAGCAGCGAGTT 4761 Query 65554 TCGCAATCCGTTCATTTCAAT--GTTGTGACGCAATTCGTCCCAGTTCCACATCG--GTT 65609 || | || | ||| | | || | || | || |||| ||||| | | | | Sbjct 4760 GCGAAGACCATG--TTTGATTACGTCATCTTTCAGTGCGGCCCAATTCCAAAGCCCAGAT 4703 Query 65610 TATCGTC-GACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAA 65668 | || |||| || |||||||| || | | | || | ||||| || || Sbjct 4702 TGAGGTGTGACACCC------CACATATCGAACTGGAAGATCCCCTTGCTGGCTGGCGAG 4649 Query 65669 CCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCG 65728 || |||| | ||||| |||| |||| ||||| | | ||||| | || Sbjct 4648 CCCTGGAACGTCTCGTAAGGTCCCAACTCCACGGCAATCTCCATGGACGTCTCCATGGCA 4589 Query 65729 GCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTAC 65788 ||||| || ||||||||||| ||| || | ||| | || | ||||||| || Sbjct 4588 GCAAAGTAGATGGTCTCGAAGATGTTCTTGTTCAATTCTTGAGCTTGCGGGCTCTCGAAC 4529 Query 65789 GGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGA 65848 || ||||| || || | ||| |||||||||||||| ||||| || || |||||| Sbjct 4528 GGGTAGTTCATCAAGATGAAGGCGTCAGCCAGACCTTGAACGCCAATGCCAATAGGACGA 4469 Query 65849 TGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGA 65908 || |||| ||||| | ||||| | ||| || || || |||| || || | Sbjct 4468 TGCCGCATGTTGGACTTGCGAGCCTCTGCTACGGGATAATAGTTGACGTCTATGACCTTG 4409 Query 65909 TTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTA 65968 || | ||||| || | ||| | || | |||| | ||| || Sbjct 4408 TTGAGGTTGCGCGTAATCACCTTGACCAC------------TTCGTA--CAACTTGCGGT 4363 Query 65969 GGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAG 66028 | ||| | | || | |||| ||||| || || || | || || | |||||| Sbjct 4362 AGTCGAACACGG----CGTCCTCCACGAACTTAGGGAGCGCGACGGACGCTAAGTTGCAC 4307 Query 66029 ACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT 66088 || || | ||| ||||| | |||||||| | | |||| ||| | || ||| |||| Sbjct 4306 ACCGCCACCTCATCAGGCGATGTATACTCCATCACTTCGCAGCATAAGTTGCTGGAGCGA 4247 Query 66089 ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTAC 66148 ||||| ||||| |||||||| || |||||| ||| ||| |||||||||| ||| | Sbjct 4246 ATGGTCCCCAAGTTCTGTTGGTTCGACTTGCGGTTGGCTGCGTCCTTGTACAGCATAAAA 4187 Query 66149 GGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 || ||| ||||| | || | || | ||||||| ||| || | || || | Sbjct 4186 GGTACGCCAGTCTCGATCTGAGCGTCCAAGATGGCGAACCACAGCTGCTGCGCGTTGATG 4127 Query 66209 GTACGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACC 66267 || | ||| ||| | |||| ||||| | |||||| || |||||| || || Sbjct 4126 GT-CTTACGCGCACGTCCTTCTGTCTCGTACTTTTCGTACAGAGTTTCGAACTCGTCGCC 4068 Query 66268 CCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTG 66327 ||| ||| | || | || | || ||||| | || ||| | || | Sbjct 4067 CCAGCACTCGTAGAGGCCCGGGGCTTCGTTAGGACAGAAGAGACTCCACTTGCCGTTGGC 4008 Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 ||||| || ||| || |||||||| | |||||| |||||||| | ||||| || || Sbjct 4007 CTCTACGCGCTTCATGAAGAGATCAGGCACCCAGAGCGCGTAGAACAAGTCGCGGGCGCG 3948 Query 66388 TTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447 || || ||||||| || || |||| || ||||||||||| | |||||| ||||| Sbjct 3947 GTGGAGTTCGTTGCCGTGGTTCTTACGCAGATCCAGGAACTCAAACACGTCGGCGTGCCA 3888 Query 66448 TGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCG 66507 || |||| |||||||||||| |||||| | || || || || || ||||| || ||||| Sbjct 3887 AGGCTCCAAGTAGATGGCGAAGGAGCCCTTGCGCTTCCCTCCGCCCTGGTCCACATAGCG 3828 Query 66508 AGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 || | ||| || ||||||| ||| || | | || || || ||| || ||||| Sbjct 3827 CGCTGTGTCGTTAAACACACGCAGCATGGGGATAATGCCATTGGACGAGCCGTTCGTGCC 3768 Query 66568 GTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCG 66626 ||| | | | | || || || || | ||| | | | | ||| || || || ||| Sbjct 3767 ACGGAT-GTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGATGCCGCCCGCCC 3709 Query 66627 TCTTCGAGATGGCAGCACAATCGGC----CACTGTCCGGAATATGCCGTCAATGGAGTCA 66682 |||||||| || || | || | |||| | | ||||| || || |||||| Sbjct 3708 ATTTCGAGATACAGGCGCATT--GCTTTAGAGTGTC--GTAGATGCCCTCGATCGAGTCA 3653 Query 66683 CCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAG 66742 ||| || | || |||| | || ||| || ||||| || ||| | || |||| Sbjct 3652 TCCTGCATAGCCAAGAGGAAACAAGAAGACAGCTGGGGACGTGGCGTGCCCGCATTGAAG 3593 Query 66743 AGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGA 66797 || || || || |||||||| ||| | | | |||||| | |||||| |||| Sbjct 3592 AGAGTAGGGGTGGCGTGCGTGAAGAACTTTTGCGACATGAGTTCGTACGTTTCGA 3538 >seq46202 Length=175750 Score = 197 bits (218), Expect = 1e-45 Identities = 583/885 (66%), Gaps = 23/885 (3%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| | |||||||| || | | || | |||| ||||| || ||||| || Sbjct 41039 CGCTTCGTTCTCTTCCCCATTCAGGAGCACGAAGTGTGGCAGATGTATAAGAAGGCAGAG 40980 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC-- 61171 || ||||||||||| | |||||| ||||| || | ||| | || |||||| ||| Sbjct 40979 GCCTCCTTCTGGACTGCCGAGGAGCTCGATCTGGTGCACGACCTCAAGGACTGG-AGCAA 40921 Query 61172 GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGG 61231 | ||| || | || | || ||||| ||||||||| | || ||||| || || | Sbjct 40920 GCTTACGGA-CAACGAGCGTCACTTCATCAAACATGTGCTTGCCTTCTTCGCTGCCAGCG 40862 Query 61232 ACGGTATCGTCAATGAGAATTTATTGGAACG--TTTCGCGCAGGAGGTGCAAGTGTCGGA 61289 | || || || || ||||| | | || | |||| | || ||||| ||| | || Sbjct 40861 ATGGAATTGTGAACGAGAACCTG--GCAATGAATTTCAGTAATGAAGTGCAGGTGCCTGA 40804 Query 61290 GGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAG 61349 || ||||| || |||||||||||||| ||||| ||||| | ||||||||| | ||| Sbjct 40803 AGCTCGTTGCTTTTACGGCTTCCAGATCGCCATCGAGAACATTCACTCGGAGGTTTACTC 40744 Query 61350 TGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAACGAT-TGTTCAATGC 61406 | | ||||| || |||||||||| ||| || || ||| | || || || | ||| Sbjct 40743 TCTGCTCATTGACACGTACATCAAGGACGCCATCGAGAA---GGACCATCTGCTGCGTGC 40687 Query 61407 CATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAG 61466 || ||||| || || || | |||||| | ||||| |||| ||| | | Sbjct 40686 AATTGAGACCATCCCTTGTGTCACCAAGAAAGCTCACTGGGCGATCAAGTGGTGCGACCC 40627 Query 61467 TACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTT 61526 | | | | | || || | ||||| ||||| | || || || | || || Sbjct 40626 TCGTGTGTCCTCGTACCCGGAGCGTCTCCTGGCTTTTGCTGCAGTAGAAGGCATCTTCTT 40567 Query 61527 CAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGAC 61586 | || || || | | || |||||||||||||| ||||| || ||||| ||||| | Sbjct 40566 CTCGGGCTCTTTCTGCTCCATTTTTTGGTTGAAGAAGCGTGGTCTCATGCCTGGTCTCAG 40507 Query 61587 CTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TG--TTTT 61643 |||| || ||| | || || |||||||||||||| || || || || | || Sbjct 40506 CTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCGTGCCTCTT 40447 Query 61644 GCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCG 61703 | || || | | ||||| | | | ||||| || ||| || ||||| || Sbjct 40446 G-TACTC-----CAAGCTGGTCACTAAGCTCCCGGAGAGCCGAGTGCACGAAATTGTGCG 40393 Query 61704 TGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGG 61763 || || || || || ||||| || || | |||| | | || || || || || Sbjct 40392 CGATGCTGTGACGATTGAACACGAGTTCGTACGTGACTCGCTTCCGGTGGAGCTGATTGG 40333 Query 61764 CATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823 |||||| | || || |||| ||||| ||||| || || || || |||||| || | Sbjct 40332 CATGAACTCGGGCCTCATGTGCCAGTACATTGAGTTCGTGGCTGATCGTCTGCTGTACTC 40273 Query 61824 TTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTC 61883 | ||| || |||||| | | || ||||| || || | |||||||||||||| Sbjct 40272 GCTCGGTGTGTCCAAGATCTACCACGCTAAGAACCCGTTCGACTGGATGGACATGATTTC 40213 Query 61884 GCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 || | || |||||||| || ||||||||||| || ||||| || Sbjct 40212 TCTTCAGGGAAAGACGAACTTCTTCGAGAAACGAGTGGGCGAGTA 40168 >seq46075 Length=65249 Score = 168 bits (186), Expect = 5e-37 Identities = 581/890 (65%), Gaps = 41/890 (5%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| | ||||||||| || | | ||| | |||| |||||||| ||||| || Sbjct 32390 CGCTTCGTGCTCTTCCCCATCCAGGAGCACGATGTGTGGCAGATGTACAAGAAGGCAGAG 32331 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGAT-TTGTCCAAAGACATGAATGACTGGGAGCG 61172 || ||||||||||| | |||||| | ||| | || | | || | || ||||||| | Sbjct 32330 GCCTCCTTCTGGACTGCCGAGGAGCTGGATCTAGTGC-ACGATCTCAACGACTGGGCGAA 32272 Query 61173 TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGA 61232 | | | ||| | || ||||| || || ||| | || ||||| || || || Sbjct 32271 ACTCACAGACAATGAGCGTCACTTCATCAAGCACGTGCTCGCCTTCTTCGCTGCCAGTGA 32212 Query 61233 CGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGG 61288 |||||||||||| |||||| | || |||| ||| | || ||||| | | | Sbjct 32211 CGGTATCGTCAACGAGAATCTGGCCAT--GAAC--TTCAGTAACGAAGTGCAGATCCCTG 32156 Query 61289 AGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACA 61348 | || || || || || ||||||||||| || || ||||| |||||||||| | ||| Sbjct 32155 AAGCTCGCTGCTTTTATGGCTTCCAGATCGCTATCGAGAACATCCACTCGGAAGTCTACT 32096 Query 61349 GTGTTCTCATCGATACGTACATCAGGGA-GCGG-GCGGAACGTGAACGATTGTTCAATGC 61406 | || || || |||||||||| ||| |||| | ||| | || | ||| | || Sbjct 32095 CGCTGCTTATTGACACGTACATCAAGGATGCGGTGGAGAAAGACCAC-CTCCTTCGA-GC 32038 Query 61407 CATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG-ATCACC- 61464 |||||||| || ||| || || |||| | |||| ||| | ||| Sbjct 32037 TATCGAGACCATCCCGTGTGTCCAGAAGAAA----------CACTCAAATGGTGTGACCC 31988 Query 61465 -AGTACAACGGC-TACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTAT 61522 || | || | ||| | || || |||| || ||||| | || || || | | Sbjct 31987 ACGTGTATCGTCGTAC----GCAGAGCGTCTGCTAGCGTTTGCTGCAGTGGAAGGAATCT 31932 Query 61523 TTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTC 61582 | ||| || ||||| | | | || ||| | ||||| || ||||||||||| || | Sbjct 31931 TCTTCTCAGGCTCGTTCTGCTCCGTGTTCTGGCTCAAGAAGCGAGGACTTATGCCTGGCC 31872 Query 61583 TGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TG-- 61639 | | |||| || || |||| ||||||||||| ||||| || || || || Sbjct 31871 TAAGCTTCTCGAACGAAATGATTAGTCGCGACGAGGGTATGCACACGGACTTCGCGTGCC 31812 Query 61640 TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTG 61699 | || || || | | ||||| || | | ||||| ||||| |||||| Sbjct 31811 TGATG-TACTCGA-----AGCTGGTCAACAAGCTGCCGGAGAGTCGTGTCCATGAGATCA 31758 Query 61700 TTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCA 61759 ||||||| || || | || || || || || || || || | || || |||| Sbjct 31757 TTCGTGACGCTGTGGCGATTGAGCACGAGTTCGTGTGCGATTCTCTCCCGGTGGAGCTCA 31698 Query 61760 TCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGG 61819 |||||||||| | | || |||| ||||| ||||| ||||| || || ||||| || Sbjct 31697 TCGGCATGAACTCGGCGCTCATGTGTCAGTACATTGAGTTTGTGGCAGATCGTCTTCTGT 31638 Query 61820 TCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGA 61879 | ||||| | |||||| || ||| |||||||| || | |||||||||| Sbjct 31637 ACTCACTGGGTGTATCCAAGATCTACAACGTGAAGAACCCATTCGACTGGATGGACATGA 31578 Query 61880 TTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 | || || | |||||||| || || |||||||| || || ||||| ||| Sbjct 31577 TCTCACTACAGGGCAAGACAAACTTCTTCGAGAAGCGCGTGGGCGAGTAT 31528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397343853646400