Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq43372 453 3e-124 seq45772 423 5e-115 >seq43372 Length=12071 Score = 453 bits (502), Expect = 3e-124 Identities = 474/619 (77%), Gaps = 9/619 (1%) Strand=Plus/Minus Query 931 TTCTCAATGTCAAGAGCGAAGTTGACCAAGGAAAGTTCCAATACTGCCTCGTCGGTGGAG 990 ||||||| || | |||||||||| ||| |||| |||| | |||||||| ||||| | Sbjct 8362 TTCTCAACATCCAATGCGAAGTTGATTAAGAAAAGCTCCAGTTTTGCCTCGTAGGTGGTG 8303 Query 991 TAGAGATCGGTGATCGTCCTTACCAAACGGACTACCTCATCAAGCACGTGCACGTAGCTC 1050 | || |||||||||||||| || || |||||||||| |||||||||||||| |||| Sbjct 8302 TTGAAATCGGTGATCGTCCCTATCAGACGGACTACCGTATCAAGCACGTGCATTTAGCGA 8243 Query 1051 TGG----TGTACAATAACCGCGTCTCGAAGAACTCCGTGCTGAAGAATCTTCAAATCAAG 1106 ||| ||||||||||||||||| | ||| | | |||||||||||||| || ||| Sbjct 8242 TGGATGGTGTACAATAACCGCGTCACCAAGTCGTATATTCTGAAGAATCTTCAGATAAAG 8183 Query 1107 CAAGGCAATGGCTATTACCTTGTTCCACGTAACCGTGATCTGCCTATCCAAGGCTGGATC 1166 ||||| || | || ||||||| |||| |||||| ||||| || |||||||||| | || Sbjct 8182 CAAGGAAACGAATACCACCTTGTCCCACCTAACCGCGATCTTCCGATCCAAGGCTAGGTC 8123 Query 1167 GATCATCACACCAAGTCAAAAACGAAAATCAACGAGGACTTCAAGCTGTATGAGTACGGC 1226 || |||||||| || ||||||||| | ||||||||| |||||||| |||||||||| Sbjct 8122 GACCATCACACAAATCTCAAAACGAAAGTGAACGAGGACCTCAAGCTGGTTGAGTACGGC 8063 Query 1227 ACTCTACCTGCTGACAAACCCAATATCTCTGCTCAAGTGACCAAGAGATCGCCAGAGGAA 1286 | | | |||||||||||||| | ||| || ||||| ||||| |||| | || ||| Sbjct 8062 AATGTGCCTGCTGACAAACCACACATCAGCGCACAAGTAACCAAACGATCTACCGAAGAA 8003 Query 1287 AAGAAGAGAAAACTTGACGATGT--CATCAAGGAGATGCGAGGCATGATCGAAGAAGGAC 1344 | || || |||| ||||| || ||||| | |||| | ||||||||||||||||| Sbjct 8002 TAAAAAAGCAAACGGGACGACGTAAAATCAAAGGGATGTGTGGCATGATCGAAGAAGGCA 7943 Query 1345 GCGAAGAGGAAGCCTTCACCAAGTTTCCTCGAAACTACTTGACCTATGGAGAAAAGCTGA 1404 |||||||||||||| || |||||| |||| ||||| | ||||| || || || | | Sbjct 7942 AAGAAGAGGAAGCCTTTACGAAGTTTTCTCGCGACTACCTCACCTACGGGGAGAACATCA 7883 Query 1405 AAGCTATGATCTCACAGCGTCGTGACTTTTTCAAGAGCAACGGTGACCCTCACATCTGGC 1464 |||| ||| | || ||||| || || ||||||||| ||| || ||||| ||||| | || Sbjct 7882 AAGCCATGTTATCGCAGCGACGCGATTTTTTCAAGTCCAATGGAGACCCGCACAT-TTGC 7824 Query 1465 TTACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCATCTATCCTGCGTATT 1524 | |||||||| | | |||||||||||||| || |||| ||| || || ||||| Sbjct 7823 TAACTGGTACGC--AGATCTGGCAAGTCTGCGATTCTGCAAGTCGCGTACCCAAAGTATT 7766 Query 1525 ACAACAAGAATCTGGACAA 1543 |||||||||| || ||||| Sbjct 7765 ACAACAAGAACCTTGACAA 7747 Score = 123 bits (136), Expect = 6e-25 Identities = 213/307 (69%), Gaps = 2/307 (1%) Strand=Plus/Plus Query 1648 TCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACTGGCTCGTA 1707 |||| || ||||| || ||||| | ||||||||||||||||| | | | |||| || | Sbjct 8439 TCTGCGATGAAGCCGGATTCCCTGCGGACCAAAAGTACAAGACCTCTCGATTGGCACGCA 8498 Query 1708 CCACTGTCTTGGTCTCTTCCAACTTCACCATCAACGATGTGATTCCGGAAGACATGCCAG 1767 | || || | || || | || ||||| | |||| |||| | || || | |||| | | Sbjct 8499 CGACAGTTCTTGTGTCGCCAAATTTCACTTTTAACGTTGTGTTACCCGAGGCCATGTCTG 8558 Query 1768 GACGCAATGAAAATCTAACGGCTCTGCGTCGTCGCTTCTATGAAGTGAACGTTCGTGTTC 1827 | | ||||| | || | ||| | |||||||| || | ||||| |||||||| | Sbjct 8559 GTC-TAATGAGAGCCTTA-TGCTTTACGTCGTCGATTTAACGAAGTCAACGTTCGGATCA 8616 Query 1828 TTTTGCAGATACTCGGACTGAAGCTTCTGTCGAAGTACGAACTGAACGGCTTGAAACGCG 1887 | | ||||| |||||||| || | ||||| ||||| ||| ||| |||||||||| Sbjct 8617 TCCTTCAGATTCTCGGACTCAAACCGCTGTCCAAGTATAAACAAAACAACTTGAAACGCC 8676 Query 1888 TGGGAAATCAAGATCCAACCAAACTCTTCATGTCGTGGGATTACACTCGTGACATTCCCA 1947 | ||||| |||||||| | | ||||| | || | || || | |||||||| | Sbjct 8677 AATGCAATCACGATCCAACGACGTTGTTCATTGCTTGAAACTATACGAGGGACATTCCTA 8736 Query 1948 CTGGAGA 1954 | || || Sbjct 8737 CGGGCGA 8743 >seq45772 Length=41892 Score = 423 bits (468), Expect = 5e-115 Identities = 444/579 (77%), Gaps = 5/579 (1%) Strand=Plus/Plus Query 984 GGTGGAGTAGAGATCGGTGATCGTCCTTACCAAACGGACTACCTCATCAAGCACGTGCAC 1043 ||||| || || |||||||||||||| ||||| |||||||||| |||||||||||||| Sbjct 34210 GGTGGTGTTGAAATCGGTGATCGTCCCTACCAGACGGACTACCGTATCAAGCACGTGCAT 34269 Query 1044 GTAGCTCTGGTGTACAATAACCGCGTCTCGAAGAACTCCGTGCTGAAGAATCTTCAAATC 1103 | || | |||||||||||||||||| | ||| || | || ||||||||||| || Sbjct 34270 TTGGCGATTGTGTACAATAACCGCGTCACCAAGTCGTCTATTCTAAAGAATCTTCAGATA 34329 Query 1104 AAGCAAGGCAATGGCTATTACCTTGTTCCACGTAACCGTGATCTGCCTATCCAAGGCTGG 1163 |||||||| || || || ||||||| |||| || ||| |||| || |||||||||| | Sbjct 34330 AAGCAAGGAAACGGATACCACCTTGTCCCACCTAGCCGCAATCTTCCGATCCAAGGCTAG 34389 Query 1164 ATCGATCATCACACCAAGTCAAAAACGAAAATCAACGAGGACTTCAAGCTGTATGAGTAC 1223 |||| |||||||| || ||||||||| | |||||||| |||||||| ||||||| Sbjct 34390 GTCGACCATCACACAAATCTCAAAACGAAAGTGAACGAGGATCTCAAGCTGGTTGAGTAC 34449 Query 1224 GGCACTCTACCTGCTGACAAACCCAATATCTCTGCTCAAGTGACCAAGAGATCGCCAGAG 1283 |||| | | |||||||||||||| | ||| || ||||| ||||| |||| | || Sbjct 34450 GGCAATTTGCCTGCTGACAAACCACACATCAGCGCACAAGTAACCAAACGATCTACCGAA 34509 Query 1284 GAAAAGAAGAGAAAACTTGACGATGTCATCAAGGAGATGCGAGGCATGATCGAAGAAGGA 1343 |||| || || |||| ||||| || ||||| | |||| | ||||||||||||||||| Sbjct 34510 GAAA--AAAAGCAAACGGGACGACGTAATCAAAGGGATGTGTGGCATGATCGAAGAAGGC 34567 Query 1344 CGCGAAGAGGAAGCCTTCACCAAGTTTCCTCGAAACTACTTGACCTATGGAGAAAAGCTG 1403 ||||| |||||||| || |||||| |||| ||||| | ||||| || || || | Sbjct 34568 AAAGAAGA-GAAGCCTTTACGAAGTTTTCTCGCGACTACCTCACCTACGGGGAGAACATC 34626 Query 1404 AAAGCTATGATCTCACAGCGTCGTGACTTTTTCAAGAGCAACGGTGACCCTCACATCTGG 1463 ||||| ||||| || || || || || ||||||||| ||| || ||||| ||||| | | Sbjct 34627 AAAGCCATGATTTCGCAACGACGCGATTTTTTCAAGTCCAATGGAGACCCGCACAT-TTG 34685 Query 1464 CTTACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCATCTATCCTGCGTAT 1523 || |||||| | ||||| |||||||||| ||| || |||| ||| || || |||| Sbjct 34686 CTAACTGGTTCGCCTGGATCTGGCAAGTTTGCGATTCTGCAAGTCGCGTACCCAAAGTAT 34745 Query 1524 TACAACAAGAATCTGGACAACCGTTTCTTCGACTTGTAC 1562 ||||||| ||| || ||||| ||| ||||||||||| Sbjct 34746 TACAACACGAACCTTGACAATATCTTC-TCGACTTGTAC 34783 Score = 253 bits (280), Expect = 5e-64 Identities = 634/949 (67%), Gaps = 22/949 (2%) Strand=Plus/Minus Query 2455 GGTGAAGGTGACGGGTCTGGTAACCAAGCCGGTCTTCGAGAGACTCCAATCGATAATCCC 2514 || || ||| | || ||||||||| ||| || | ||| |||| |||| ||||| Sbjct 26129 GGAGATGGTAATGGATCTGGTAACGCAGCTGGGTTGAAGGAGCCTCCGATCGCCAATCCG 26070 Query 2515 TATGTCGTGTTCAGAGGACCACCAGACTATACGTTCGCGAGTCTGCCGTATGTTGAAACG 2574 | | || | |||||||||||||| || || || || | ||||| ||||| Sbjct 26069 TGCATTGTCTATAGAGGACCACCAGATTACACATTTGCATCCATCCCGTACACGAAAACG 26010 Query 2575 CGATACGCGGGTATTGCAGACTACTATTCGAGAGATCATATCTTTCGTCTGACCTCACCA 2634 ||||||| | || | |||||||| || || || |||||||||| || || | Sbjct 26009 CGATACGAGAACATAACCGACTACTACTCTCAGGACCAC-TCTTTCGTCTAACATCTCTG 25951 Query 2635 TACGATTGTTCGCAAGCCAATTCTGTTGTTGGCATTAACGC--TGGTGCTGGTGTTACAA 2692 || || || ||||| || ||| | | ||| | || || |||||| | | Sbjct 25950 TATGACGTATCACAAGCATATGCTGCGCT--GAATTCAAGCAATGAAGCTGGTTTAATGT 25893 Query 2693 ACATTACTCCTGAGAGCGCTGATGGAA-CGTTGCAATCGGCCCGGTGGTTTAACTACTAC 2751 | || |||| || || ||||||| | | ||| | | || ||||| ||||||| Sbjct 25892 TTACCACGGCTGAAAGTGCAGATGGAAACATCACAAAAG-CGCGATGGTTCGACTACTAT 25834 Query 2752 TCCGGACTATACAACTACTATCATGTGGTATCGTGCCAGTACAATGTGTTTGTGGAGAAC 2811 | | |||||||||||||| || || || ||||| ||||| ||||||| ||| ||| Sbjct 25833 GGTGATTTGTACAACTACTATCACGTCGTGTCATGCCAATACAACGTGTTTGCGGAAAAC 25774 Query 2812 TTATCTACAGAACCTTTGTGGGTATAC-CGACTCTTCTACAACGATGACCAGCCAAATAC 2870 |||| | ||||||| |||| ||||||| ||| | ||| ||| |||||| || || ||||| Sbjct 25773 TTATTTGCAGAACCGTTGTAGGTATACACGA-TGTTCGACATCGATGATCAACCGAATAC 25715 Query 2871 ACTGGCTAGTAACGACGATATGCAGCTGTGGCCAAACACAATGTACCACTATCTCGATCG 2930 ||| || | ||||| |||| | ||||| | || || || | || || || || Sbjct 25714 ACTTGCGTCCAGCGACGGCATGCCGTTGTGGTCTAAAACCGAATATTATTACCTGGACCG 25655 Query 2931 CCGTGCTCTTGCTATCACTGGAACTG---GAAAAGTTGAAGTTGCAGGAGAACATCCTGA 2987 ||||| ||| ||| | | | || | | ||||| || |||||| || || Sbjct 25654 TCGTGCGATTGATATTA---GCATTGTGGGTCAGGTTGAGACAGCTGGAGAAGCACCAGA 25598 Query 2988 TGACACCATCAATGCTGAGAACATCAACTCGACTGCCTTGATAGACAATTTTGAGAATAC 3047 | || ||||||| |||| |||| || | || | || || || || | | Sbjct 25597 T---ACTATCAATGTGGAGACTGGCAACAGTACCACGCTGTTGGATAACTTCGAAACCAA 25541 Query 3048 GAACATGGTGGCAAACAATGGTGTATCCAAGTGTGTCATTTCTGGAGAATACCGTACTGG 3107 |||||| || || |||||| |||||||| ||| |||||| |||| | || Sbjct 25540 TAACATGATGAGCAATAATGGTAAGAGTAAGTGTGTTATTAGTGGAGAGTACCACGCAGG 25481 Query 3108 TCAACACACAGGAGAAATTCGTTTGGATTCATCAGTTGAGAATTGGACGGCTACTAACAC 3167 || | | ||||| || ||||| || |||| || |||||||||||||| ||||| Sbjct 25480 ACAGTATCGTCGTGAAATCCGATTGGACTCGTCAGCTGGAAATTGGACGGCTACGAACAC 25421 Query 3168 AAACCCTCTACTTCCGGAGAAACTATTGATTCGTGTGAAGCCTGTGAATGATACAGTTCG 3227 | | |||| |||||||| || || |||| | ||| ||||| || || | || | Sbjct 25420 -ACCTCTCTTCTTCCGGAAAATTTAATGATAAGGGTGGAGCCTACCAACGACGCTGTCGG 25362 Query 3228 TCTAAACAGTGCTACTAGTTCTGGTGACGATCTTAAGTACAAGATTGTTGTGAAGCTGAA 3287 |||||| ||||| | ||| || ||||| || ||||||||| |||| | ||| | | Sbjct 25361 CACAAACAGCGCTACAATTTC-GGCGACGACCTCAAGTACAAGTTTGTCATCAAGTTAAG 25303 Query 3288 CTACCTTGTCGAGTTCAAGGAACTTCCTGTCGGTCTACGTTATCCAGTGCAAAGACAACC 3347 |||||| || ||| ||||||| | | ||||| || |||||||| | |||| || Sbjct 25302 CTACCTGGTAGAGCGCAAGGAAAAACTAATTGGTCTGCGGTATCCAGTATCACGACAGCC 25243 Query 3348 TTTGACTGTTACAATTGCTGCTGACGTGGAGTCTACGAACTA--ATGGT 3394 ||||| ||||| || ||| | ||||||| | | |||| || ||||| Sbjct 25242 GTTGACAGTTACGATAGCTTCAGACGTGGCGAGTGCGAATTAGCATGGT 25194 Score = 150 bits (166), Expect = 4e-33 Identities = 221/310 (71%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 1636 TCCTAAAGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGC 1695 |||| || || |||| || ||||| || ||||| || ||||||||||||||| | || | Sbjct 34109 TCCTTAAAACATTCTGCGATGAAGCCGGATTCCCTGTGGACCAAAAGTACAAGGCCCCTC 34050 Query 1696 AACTGGCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCATCAACGATGTGATTCCGG 1755 | |||| || || || || | || || || || ||||||||||||| |||| | || | Sbjct 34049 GATTGGCACGCACGACAGTTCTTGTGTCCTCAAATTTCACCATCAACGTTGTGTTACCCG 33990 Query 1756 AAGACATGCCAGGACGCAATGAAAATCTAACGGCTCTGCGTCGTCGCTTCTATGAAGTGA 1815 | | ||| | || | ||||| | || | ||| | |||||||| || | |||| | Sbjct 33989 AGGCGATGTCTGG-CCTAATGAGAGCCTTA-TGCTTTACGTCGTCGATTTAACGAAGGCA 33932 Query 1816 ACGTTCGTGTTCTTTTGCAGATACTCGGACTGAAGCTTCTGTCGAAGTACGAACTGAACG 1875 ||||||| | | | ||||| |||||||| || | ||||| ||||| ||||| ||| Sbjct 33931 ACGTTCGGATCATCCTCCAGATGCTCGGACTCAAACCGCTGTCCAAGTATGAACTAAACA 33872 Query 1876 GCTTGAAACGCGTGGGAAATCAAGATCCAACCAAACTCTTCATGTCGTGGGATTACACTC 1935 |||||||||| | ||||||||||| || | | ||||| | |||| || || Sbjct 33871 ACTTGAAACGCCAATGCAATCAAGATCCCACGACGTTGTTCATTGCTTGGGGCTATACGA 33812 Query 1936 GTGACATTCC 1945 | |||||||| Sbjct 33811 GGGACATTCC 33802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11891580186200