Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20infestans_20[genbank_20GCA_5F001661535.1_202016-06- 10] 46,260 sequences; 152,114,506 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq45949 89.7 7e-13 >seq45949 Length=51796 Score = 89.7 bits (98), Expect = 7e-13 Identities = 252/385 (65%), Gaps = 4/385 (1%) Strand=Plus/Minus Query 162455 TCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGA--AAGA 162512 ||||||||||| || |||||||| || || ||| | || ||||||| | | || Sbjct 10688 TCTACCAAGCGTCTACAAGTGAGCTGTACGGTAAAGT--ACTAGCCACCCCACAAGACGA 10631 Query 162513 AACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGAT 162572 | ||| ||| | |||| || || || |||||||| || || | | | | ||||| Sbjct 10630 GAGCACGCCATTTCATCCGCGTTCACCGTATGGAGTGGCAAAGCAGTTCGCTTACTGGAG 10571 Query 162573 CATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCA 162632 | | |||| | | ||| || | || | ||| || ||| |||||||| || || Sbjct 10570 TGTAATAAACCATCGCGAAGCTTACGGAATGTACGCCGTTAACGGGATTCTATTTAACCA 10511 Query 162633 CGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCG 162692 ||| || | || | ||| || || ||||| || || ||| ||||| || || Sbjct 10510 CGAGAGTCCTCGACGTGGACCTACTTTTGTCACTCGTAAAATCACTCGAGCGGTGGTGCG 10451 Query 162693 AATTAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTG 162752 ||| | | || || ||||| || | || |||||| ||||| || ||||| Sbjct 10450 TATTCGCGCTGGCATCGAAAGTTGCCTCTTCGTAGGCAACCTCGATGCCAAGCGCGACTG 10391 Query 162753 GGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGA 162812 ||| ||||| ||||||||| || ||||||| ||||| ||||| || | || || Sbjct 10390 GGGCCACGCTCGAGACTACGTGGAATGTATGTGGCGAATGCTACAGCACGACACTCCTGA 10331 Query 162813 TGATTATGTGATCGCAACTGGTGAG 162837 |||| ||| | || || || ||| Sbjct 10330 GGATTTCGTGGTTGCCACGGGCGAG 10306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691059363717600