Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2971 239 7e-61 seq2448 223 5e-56 seq2764 156 6e-36 seq2003 132 7e-29 seq2793 105 1e-20 >seq2971 Length=269 Score = 239 bits (264), Expect = 7e-61 Identities = 186/218 (85%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 12 AGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGA 71 ||||||||| |||| || |||| ||||||| ||| |||||||||||| ||||||| |||| Sbjct 1 AGGGACGTAATCAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-CCTCGTTCAAGA 58 Query 72 CCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTG 130 | | |||||||| |||||||| | ||||||| |||| |||||||||| ||||| Sbjct 59 CTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATTACCCAGACCTA 118 Query 131 TCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACAT 190 ||| |||||| || |||||||||| |||||||||||||||||||||||||||||||| Sbjct 119 TCGATCAAGGTTGTATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCGGCCCAGAACAT 178 Query 191 CTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||| |||||||||||||| ||||||| Sbjct 179 CTAAGGGCATCACAGCCCTGTTATTGCCTCCAACTTCC 216 >seq2448 Length=258 Score = 223 bits (246), Expect = 5e-56 Identities = 176/207 (85%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 23 CAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGC 82 ||| || |||| ||||||| ||| |||||||||||| ||||||| ||||| | |||||| Sbjct 258 CAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-CCTCGTTCAAGACTGAAAATTGC 201 Query 83 AATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGT 141 || |||||||| | ||||||| |||| |||||||||| ||||| ||| |||||| Sbjct 200 AACAGTCTATCCCTAGCACGATGCGCATTCACAAGATTACCCAGACCTATCGATCAAGGT 141 Query 142 GATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATC 201 || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 140 TGTATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATC 81 Query 202 ACAGACCTGTTATTGCCTCAAACTTCC 228 |||| |||||||||||||| ||||||| Sbjct 80 ACAGGCCTGTTATTGCCTCCAACTTCC 54 >seq2764 Length=289 Score = 156 bits (172), Expect = 6e-36 Identities = 128/153 (84%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 50 CTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT 109 ||||||||| ||||||| ||||| | |||||||| |||||||| | ||||||| Sbjct 152 CTAGGAATT-CCTCGTTCAAGACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCA 94 Query 110 TTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTA 168 |||| |||||||||| | ||| ||| |||||| || |||||||||| |||||||||| Sbjct 93 TTCACAAGATTACCCAGTCCTATCGATCAAGGTTGTATACTCGTTGAACGCATCAGTGTA 34 Query 169 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATC 201 ||||||||||||||||||||||||||||||||| Sbjct 33 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATC 1 >seq2003 Length=262 Score = 132 bits (146), Expect = 7e-29 Identities = 124/154 (81%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 22 TCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTG 81 |||| || |||| ||||||| ||| |||||||||||| ||||||| ||||| | ||||| Sbjct 111 TCAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-CCTCGTTCAAGACTGAAAATTG 168 Query 82 CAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGG 140 ||| |||||||| | | ||||| |||| |||||||||| ||||| ||| ||||| Sbjct 169 CAACAGTCTATCCCTAGCCCGATGCGCATTCACAAGATTACCCAGACCTATCGATCAAGG 228 Query 141 TGATAGACTCGTTGAATACATCAGTGTAGCGCGC 174 | || |||||||||| |||||||||||||||| Sbjct 229 TTGTATACTCGTTGAACGCATCAGTGTAGCGCGC 262 >seq2793 Length=216 Score = 105 bits (116), Expect = 1e-20 Identities = 88/105 (84%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || ||| |||||||| || |||||||||| ||| Sbjct 117 GTACAAAGGGCAGGGACGTAATCAATGCAAGC-TGATGACTTTCGTTTACTAGGAA-TTC 60 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATG 105 |||||| ||||| | |||||||| |||||||| | ||||||| Sbjct 59 CTCGTTCAAGACTGAAAATTGCAACAGTCTATCCCTAGCACGATG 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751963385590