Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq2983 104 1e-20 seq4294 82.4 4e-14 seq1772 75.2 6e-12 >seq2983 Length=207 Score = 104 bits (114), Expect = 1e-20 Identities = 95/119 (80%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA--AATGATAACATCGC 58 ||||||||||||||||||||||| || || || || |||| || | ||| | Sbjct 161 GAACCCAAAGACTTTGATTTCTCATACGGGGCTGACAAGGTCATTTAAAGTAAACGACTG 102 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 101 CCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 43 >seq4294 Length=227 Score = 82.4 bits (90), Expect = 4e-14 Identities = 78/99 (79%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA--AATGATAACATCGC 58 ||||||||||||||||||||||| | ||||| || |||| || | ||| | Sbjct 127 GAACCCAAAGACTTTGATTTCTCATCCGGTGCTGACAAGGTCATTTAAAGTAAACGACTG 186 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGA 97 || ||||| ||||||||||||||| |||||||||||||| Sbjct 187 CCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGA 225 >seq1772 Length=248 Score = 75.2 bits (82), Expect = 6e-12 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| || ||||||| Sbjct 26 CCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATAATCTTCGA 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278386882140