Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2179 185 4e-44 seq4381 163 1e-37 seq1736 150 7e-34 seq1692 138 5e-30 seq2582 96.9 1e-17 seq3409 91.5 6e-16 seq1856 87.8 7e-15 seq3392 82.4 3e-13 seq2759 78.8 4e-12 >seq2179 Length=219 Score = 185 bits (204), Expect = 4e-44 Identities = 141/165 (85%), Gaps = 5/165 (3%) Strand=Plus/Minus Query 512 GCACCATCGACCGATCCTGATGTCTTCG----GATGGATTTGAGTAAGAGCATAGCTGTT 567 |||| ||||||||||| ||| ||||| || ||||||||| ||||| | |||| Sbjct 164 GCACTATCGACCGATCATGACC-CTTCGTGGTGAAAGATTTGAGTTTGAGCACATATGTT 106 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 || ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 105 GGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGG 46 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 | ||||| |||| ||||| |||||||||||||||||||| ||||| Sbjct 45 AAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGG 1 >seq4381 Length=227 Score = 163 bits (180), Expect = 1e-37 Identities = 127/150 (85%), Gaps = 5/150 (3%) Strand=Plus/Minus Query 517 ATCGACCGATCCTGATGTCTTCG----GATGGATTTGAGTAAGAGCATAGCTGTTGGGAC 572 ||||||||||| ||| ||||| || ||||||||| ||||| | |||||| || Sbjct 149 ATCGACCGATCATGAAC-CTTCGTGGTGAAAGATTTGAGTTTGAGCACATATGTTGGTAC 91 Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632 |||||||||||||| |||||||||| |||||||||||||| ||||||||||||||| ||| Sbjct 90 CCGAAAGATGGTGACCTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCT 31 Query 633 CGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 || |||| ||||| |||||||||||||||| Sbjct 30 CGTAGCGATTCTGACGTGCAAATCGATCGT 1 >seq1736 Length=204 Score = 150 bits (166), Expect = 7e-34 Identities = 119/143 (83%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 57 AATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGAT 116 |||||||| | || | || |||||||| | |||||||||||||||||| ||||||||| Sbjct 204 AATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAATATTGGTGCGAGACCGAT 145 Query 117 AGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCAC 176 |||| ||||||| |||| ||||||||||||| |||||| ||||||||||||| || || Sbjct 144 AGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAAGAGTAC 85 Query 177 GTGAAATTGTTGAAAGGGAAGCG 199 ||||| | |||||||||| || Sbjct 84 CTGAAACTTCTGAAAGGGAACCG 62 >seq1692 Length=204 Score = 138 bits (152), Expect = 5e-30 Identities = 103/121 (85%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 79 AAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGA 138 ||||| | |||||||||||||||||| ||||||||||||| ||||||| |||| || Sbjct 204 AAATTCCATCTAAAGCTAAATATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGA 145 Query 139 AAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 ||||||||||| |||||| ||||||||||||| || || ||||| || |||||||||| | Sbjct 144 AAGATGAAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAACC 85 Query 199 G 199 | Sbjct 84 G 84 >seq2582 Length=215 Score = 96.9 bits (106), Expect = 1e-17 Identities = 75/88 (85%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT-CA 463 || ||||||||| ||||||| |||||||||||||||| | ||| |||||| |||||| | Sbjct 160 CGACCCGTCTTGAAACACGGCCCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGA 101 Query 464 AACCCGTGCGCGTAATGAAAGTGAACGG 491 ||||| ||||| |||||||||||| || Sbjct 100 AACCCAAGCGCGAAATGAAAGTGAAGGG 73 >seq3409 Length=1459 Score = 91.5 bits (100), Expect = 6e-16 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 611 AGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTG 670 || ||||||| || |||| || || |||| ||||| |||||||||||||||||||| ||| Sbjct 313 AGGGGAAACTATGATGGAAGCCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTG 254 Query 671 GGTATAGGGGCGA 683 ||||||||||||| Sbjct 253 GGTATAGGGGCGA 241 >seq1856 Length=228 Score = 87.8 bits (96), Expect = 7e-15 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 122 ACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAA 181 ||||||| |||| ||||||||||||| |||||| ||||||||||||| || || |||| Sbjct 227 ACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAA 168 Query 182 ATTGTTGAAAGGGAAGCG 199 | || |||||||||| || Sbjct 167 ACTGCTGAAAGGGAACCG 150 >seq3392 Length=244 Score = 82.4 bits (90), Expect = 3e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 68 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 9 Query 100 ATTGG 104 ||||| Sbjct 8 ATTGG 4 >seq2759 Length=258 Score = 78.8 bits (86), Expect = 4e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 137 GAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||||||||||||| |||||| ||||||||||||| || || ||||| || |||||||||| Sbjct 3 GAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAA 62 Query 197 GCG 199 || Sbjct 63 CCG 65 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079892192300