Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq2322 98.7 3e-18 seq3753 93.3 1e-16 seq2224 93.3 1e-16 seq3721 89.7 1e-15 seq1943 89.7 1e-15 >seq2322 Length=709 Score = 98.7 bits (108), Expect = 3e-18 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 211 AAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGA 270 |||| ||| |||| | ||||| ||| |||||||||||| |||||| | ||||| Sbjct 26 AAATACGTTGATAATAGAAGGAAGACCTATGGCGAAGGCAATTATCTGGGAATATACTGA 85 Query 271 CGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCT 330 | || | |||||||| |||| ||| ||| ||||||||||||| ||||||||| || | Sbjct 86 CACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTAGATACCCCGGTAGTCCATGCTGT 145 Query 331 AAACGAT 337 ||||||| Sbjct 146 AAACGAT 152 >seq3753 Length=677 Score = 93.3 bits (102), Expect = 1e-16 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 229 AGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCG 288 ||||| ||| |||||||||||| ||||| | |||||| || | |||||||| Sbjct 12 AGGAAGACCTATGGCGAAGGCAATTATCTGGGTATATACTGACACTGAGAAACGAAAGCT 71 Query 289 TGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||| ||| ||||||||||||| ||||||||| || |||||||| Sbjct 72 TGGGGAGCGAACGGGATTAGATACCCCGGTAGTCCATGCTGTAAACGAT 120 >seq2224 Length=206 Score = 93.3 bits (102), Expect = 1e-16 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 211 AAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGA 270 |||| ||| |||| | ||||| ||| |||||||||||| ||||| | ||||| Sbjct 81 AAATACGTTGATAATAGAAGGAAGACCTATGGCGAAGGCAATTATCTGGGTATATACTGA 140 Query 271 CGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCT 330 | || | |||||||| |||| ||| ||| ||||||||||||| ||||||||| || | Sbjct 141 CACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTAGATACCCCGGTAGTCCATGCTGT 200 Query 331 AAACGA 336 |||||| Sbjct 201 AAACGA 206 >seq3721 Length=677 Score = 89.7 bits (98), Expect = 1e-15 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 229 AGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCG 288 ||||| ||| |||||||||||| ||||| | |||||| || | |||||||| Sbjct 666 AGGAAGACCTATGGCGAAGGCAATTATCTGGGTATATACTGACACTGAGAAACGAAAGCT 607 Query 289 TGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||| ||| ||| ||||||||||||| ||||||||| || |||||||| Sbjct 606 TGGGAAGCGAACGGGATTAGATACCCCGGTAGTCCATGCTGTAAACGAT 558 >seq1943 Length=781 Score = 89.7 bits (98), Expect = 1e-15 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 211 AAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGA 270 |||| ||| |||| | ||||| ||| |||||||||||| ||||| | ||||| Sbjct 190 AAATACGTTGATAATAGAAGGAAGACCTATGGCGAAGGCAATTATCTGGGTATATACTGA 131 Query 271 CGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCT 330 | || | |||||||| |||| ||| ||| ||||||||| ||| ||||||||| || | Sbjct 130 CACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTAGATCCCCCGGTAGTCCATGCTGT 71 Query 331 AAACGAT 337 ||||||| Sbjct 70 AAACGAT 64 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289535184704