Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq4050 82.4 1e-13 seq3785 77.0 5e-12 seq2951 77.0 5e-12 >seq4050 Length=232 Score = 82.4 bits (90), Expect = 1e-13 Identities = 74/92 (80%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||||||||| || |||||||| ||||| | || ||| | ||| Sbjct 175 CTTCCAGCACCGGGCAGGCGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 117 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATT 98 ||||||| ||||||||||| ||| ||||| Sbjct 116 AAGTTTTTATTAAACAGTCGCAACCCCCTATT 85 >seq3785 Length=246 Score = 77.0 bits (84), Expect = 5e-12 Identities = 73/92 (79%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 100 CTTCCAGCACCGGGCAGGTGTCAGCCCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 42 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATT 98 ||||||| ||||||||||| ||| ||||| Sbjct 41 AAGTTTTTATTAAACAGTCGCAACCCCCTATT 10 >seq2951 Length=255 Score = 77.0 bits (84), Expect = 5e-12 Identities = 73/92 (79%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 58 CTTCCAGCACCGGGCAGGAGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 116 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATT 98 ||||||| ||||||||||| ||| ||||| Sbjct 117 AAGTTTTTATTAAACAGTCGCAACCCCCTATT 148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694366190098