Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq4050 86.0 6e-15 seq2951 80.6 3e-13 seq3785 77.0 3e-12 >seq4050 Length=232 Score = 86.0 bits (94), Expect = 6e-15 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 67 TGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTG 126 |||||||||||| ||||||| || ||||||| || | || || ||||||||| || Sbjct 95 TGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGTAACATGATGTATAGGGTCTG 154 Query 127 ACGCCTGCCCGGTGCCGGAAGGTTAAT 153 ||||||||||||||| ||||| ||||| Sbjct 155 ACGCCTGCCCGGTGCTGGAAGATTAAT 181 >seq2951 Length=255 Score = 80.6 bits (88), Expect = 3e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 67 TGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTG 126 |||||||||||| ||||||| || ||||||| || | || || ||||||||| || Sbjct 138 TGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGTAACATGATGTATAGGGTCTG 79 Query 127 ACGCCTGCCCGGTGCCGGAAGGTTAAT 153 || |||||||||||| ||||| ||||| Sbjct 78 ACTCCTGCCCGGTGCTGGAAGATTAAT 52 >seq3785 Length=246 Score = 77.0 bits (84), Expect = 3e-12 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 67 TGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTG 126 |||||||||||| ||||||| || ||||||| || | || || |||||||| || Sbjct 20 TGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGTAACATGATGTATAGGGGCTG 79 Query 127 ACGCCTGCCCGGTGCCGGAAGGTTAAT 153 || |||||||||||| ||||| ||||| Sbjct 80 ACACCTGCCCGGTGCTGGAAGATTAAT 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476776784906