Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq3785 163 7e-38 seq3338 163 7e-38 seq2113 156 1e-35 seq3805 149 2e-33 seq1937 141 2e-31 seq4050 91.5 4e-16 seq2951 87.8 5e-15 >seq3785 Length=246 Score = 163 bits (180), Expect = 7e-38 Identities = 171/230 (74%), Gaps = 9/230 (4%) Strand=Plus/Minus Query 51 TGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 110 ||||||||||| | ||||||| |||||| |||||||||||||||||||||||||||| Sbjct 240 TGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAA 181 Query 111 TTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAG 170 ||||||||||||||| |||||||||||||||| ||| |||| || | | Sbjct 180 TTTCGCTACCTTAGGNNNNNNNNNNNTACGGCCGCCGTTTACTGGGACTTCCATTTAATG 121 Query 171 CTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTAT 230 | | ||| | | ||||| ||||| |||||||||||| |||| |||||| Sbjct 120 C---------GTAAACATCTCCTATTAATCTTCCAGCACCGGGCAGGTGTCAGCCCCTAT 70 Query 231 ACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCA 280 || || || | || ||||||| || ||||||| |||||||||||| Sbjct 69 ACATCATGTTACCATTTAGCAGAGTCCTAAGTTTTTATTAAACAGTCGCA 20 >seq3338 Length=275 Score = 163 bits (180), Expect = 7e-38 Identities = 119/138 (86%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | ||||| |||||||||||| ||||||||||| | ||||| Sbjct 138 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 79 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 78 ACTCCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 19 Query 133 TTGTTACGGCCGCCGTTT 150 |||||||||||||||| Sbjct 18 GAGTTACGGCCGCCGTTT 1 >seq2113 Length=273 Score = 156 bits (172), Expect = 1e-35 Identities = 116/136 (85%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | ||||| |||||||||||| ||||||||||| | ||||| Sbjct 136 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 77 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 76 CCACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 17 Query 133 TTGTTACGGCCGCCGT 148 |||||||||||||| Sbjct 16 GAGTTACGGCCGCCGT 1 >seq3805 Length=267 Score = 149 bits (164), Expect = 2e-33 Identities = 111/130 (85%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | ||||| |||||||||||| ||||||||||| | ||||| Sbjct 138 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATTTCGTT 197 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 198 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 257 Query 133 TTGTTACGGC 142 |||||||| Sbjct 258 GAGTTACGGC 267 >seq1937 Length=263 Score = 141 bits (156), Expect = 2e-31 Identities = 107/126 (85%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | ||||| |||||||||||| ||||||||||| | ||||| Sbjct 126 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGTGATGTCGTT 67 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 66 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 7 Query 133 TTGTTA 138 |||| Sbjct 6 GAGTTA 1 >seq4050 Length=232 Score = 91.5 bits (100), Expect = 4e-16 Identities = 107/146 (73%), Gaps = 9/146 (6%) Strand=Plus/Minus Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAA 194 |||||||||||||||||| ||| |||| || | || | ||| | | | Sbjct 231 GTTACGGCCGCCGTTTACTGGGACTTCCATTTAATGCGTA---------AACATCTCCTA 181 Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 |||| ||||| ||||||||||||||||| ||||||||| || || | || |||||| Sbjct 180 TTAATCTTCCAGCACCGGGCAGGCGTCAGACCCTATACATCATGTTACCATTTAGCAGAG 121 Query 255 TGCTGTGTTTTTAATAAACAGTCGCA 280 | || ||||||| |||||||||||| Sbjct 120 TCCTAAGTTTTTATTAAACAGTCGCA 95 >seq2951 Length=255 Score = 87.8 bits (96), Expect = 5e-15 Identities = 106/146 (73%), Gaps = 9/146 (6%) Strand=Plus/Plus Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAA 194 |||||||||||||||||| ||| |||| || | || | ||| | | | Sbjct 2 GTTACGGCCGCCGTTTACTGGGACTTCCATTTAATGCGTA---------AACATCTCCTA 52 Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 |||| ||||| |||||||||||| |||| ||||||||| || || | || |||||| Sbjct 53 TTAATCTTCCAGCACCGGGCAGGAGTCAGACCCTATACATCATGTTACCATTTAGCAGAG 112 Query 255 TGCTGTGTTTTTAATAAACAGTCGCA 280 | || ||||||| |||||||||||| Sbjct 113 TCCTAAGTTTTTATTAAACAGTCGCA 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260736632192