Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq3785 172 1e-40 seq3338 150 4e-34 seq2113 141 2e-31 seq3805 136 8e-30 seq1937 129 1e-27 seq2951 116 8e-24 seq4050 113 1e-22 >seq3785 Length=246 Score = 172 bits (190), Expect = 1e-40 Identities = 176/234 (75%), Gaps = 11/234 (5%) Strand=Plus/Minus Query 40 TATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACA 99 ||||| ||||||| | | ||||||| || ||| ||| ||||||||||||||||||| Sbjct 243 TATTG--GAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACA 186 Query 100 AGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTT 159 |||||||||||||||||||| |||||||||||||||||||| ||| || Sbjct 185 AGGAATTTCGCTACCTTAGGNNNNNNNNNNNTACGGCCGCCGTTTACTGGGACTTCCATT 126 Query 160 CACTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCT 219 | ||| | |||| ||| |||| |||||||||||||||||| |||||| Sbjct 125 TAATGCGTA---------AACATCTCCTATTAATCTTCCAGCACCGGGCAGGTGTCAGCC 75 Query 220 CCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGC 273 |||||||||| | || | | |||||||| ||| |||||| ||||||||||| Sbjct 74 CCTATACATCATGTTACCATTTAGCAGAGTCCTAAGTTTTTATTAAACAGTCGC 21 >seq3338 Length=275 Score = 150 bits (166), Expect = 4e-34 Identities = 116/138 (84%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||||| | ||||||| | | ||||| Sbjct 138 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 79 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 78 ACTCCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 19 Query 127 TAGTTACGGCCGCCGTTT 144 ||||||||||||||||| Sbjct 18 GAGTTACGGCCGCCGTTT 1 >seq2113 Length=273 Score = 141 bits (156), Expect = 2e-31 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||||| | ||||||| | | ||||| Sbjct 136 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 77 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 | || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 76 CCACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 17 Query 127 TAGTTACGGCCGCCGT 142 ||||||||||||||| Sbjct 16 GAGTTACGGCCGCCGT 1 >seq3805 Length=267 Score = 136 bits (150), Expect = 8e-30 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||||| | ||||||| | | ||||| Sbjct 138 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATTTCGTT 197 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 198 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 257 Query 127 TAGTTACGGC 136 ||||||||| Sbjct 258 GAGTTACGGC 267 >seq1937 Length=263 Score = 129 bits (142), Expect = 1e-27 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||||| | ||||||| | | ||||| Sbjct 126 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGTGATGTCGTT 67 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 66 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 7 Query 127 TAGTTA 132 ||||| Sbjct 6 GAGTTA 1 >seq2951 Length=255 Score = 116 bits (128), Expect = 8e-24 Identities = 171/245 (70%), Gaps = 17/245 (7%) Strand=Plus/Plus Query 128 AGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCC 187 ||||||||||||||||||||||| ||| || | ||| | |||| ||| Sbjct 1 AGTTACGGCCGCCGTTTACTGGGACTTCCATTTAATGCGTA---------AACATCTCCT 51 Query 188 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGA 247 |||| |||||||||||||||||| ||||| |||||||||| | || | | |||||||| Sbjct 52 ATTAATCTTCCAGCACCGGGCAGGAGTCAGACCCTATACATCATGTTACCATTTAGCAGA 111 Query 248 AACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT--------GTCA 299 ||| |||||| ||||||||||| |||||| || || | Sbjct 112 GTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTAGTGACANCTAATTATTAAAAA 171 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAG 359 || ||| || || |||| ||||||| |||||||||||||||||||| | |||| Sbjct 172 TAATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAATATAG 231 Query 360 TTCTC 364 ||||| Sbjct 232 TTCTC 236 >seq4050 Length=232 Score = 113 bits (124), Expect = 1e-22 Identities = 168/241 (70%), Gaps = 17/241 (7%) Strand=Plus/Minus Query 128 AGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCC 187 ||||||||||||||||||||||| ||| || | ||| | |||| ||| Sbjct 232 AGTTACGGCCGCCGTTTACTGGGACTTCCATTTAATGCGTA---------AACATCTCCT 182 Query 188 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGA 247 |||| |||||||||||||||||||||||| |||||||||| | || | | |||||||| Sbjct 181 ATTAATCTTCCAGCACCGGGCAGGCGTCAGACCCTATACATCATGTTACCATTTAGCAGA 122 Query 248 AACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT--------GTCA 299 ||| |||||| ||||||||||| |||||| || || | Sbjct 121 GTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTAGTGACAACTAATTATTAAAAA 62 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAG 359 || ||| || || |||| ||||||| |||||||||||||||||||| | |||| Sbjct 61 TAATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAATATAG 2 Query 360 T 360 | Sbjct 1 T 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062346603776