Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq2322 147 7e-33 seq3692 143 8e-32 seq3445 131 5e-28 seq3447 120 9e-25 seq3446 118 3e-24 seq3722 113 1e-22 seq3134 113 1e-22 seq2601 113 1e-22 seq1743 113 1e-22 seq3753 95.1 4e-17 seq3721 95.1 4e-17 seq2996 95.1 4e-17 seq2304 95.1 4e-17 >seq2322 Length=709 Score = 147 bits (162), Expect = 7e-33 Identities = 157/203 (77%), Gaps = 7/203 (3%) Strand=Plus/Plus Query 295 GGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGA 354 ||||| |||||||| || ||||| ||||||||| |||||||||||||||||||||||| | Sbjct 496 GGGGATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAATG-A 554 Query 355 CAAT-ACAAAGGGCAGCGAAACCGCG----AGGTCAAGCAAATCCCATAAAGTTGTTCTC 409 ||| |||| | | ||| | | | | | |||||||| ||| || | || Sbjct 555 TAATCACAATGAGAAGCAATAATGATTAAAAATTGGAGCAAATCTTTAAAAATTATCCT- 613 Query 410 AGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGAT 469 |||||||||| | ||| |||||| | ||||||| |||||||||||||||||| ||| Sbjct 614 AGTTCGGATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAA 673 Query 470 CAGCATGCTACGGTGAATACGTT 492 ||||||||| ||||||||| ||| Sbjct 674 CAGCATGCTGCGGTGAATATGTT 696 >seq3692 Length=232 Score = 143 bits (158), Expect = 8e-32 Identities = 156/203 (77%), Gaps = 7/203 (3%) Strand=Plus/Minus Query 295 GGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGA 354 ||||| |||||||| || ||||| ||||||||| |||||||||||||||||||||||| | Sbjct 232 GGGGATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAATG-A 174 Query 355 CAAT-ACAAAGGGCAGCGAAACCGCG----AGGTCAAGCAAATCCCATAAAGTTGTTCTC 409 ||| |||| | | || | | | | | |||||||| ||| || | || Sbjct 173 TAATCACAATGAGAAGAAATAATGATTAAAAATTGGAGCAAATCTTTAAAAATTATCCT- 115 Query 410 AGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGAT 469 |||||||||| | ||| |||||| | ||||||| |||||||||||||||||| ||| Sbjct 114 AGTTCGGATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAA 55 Query 470 CAGCATGCTACGGTGAATACGTT 492 ||||||||| ||||||||| ||| Sbjct 54 CAGCATGCTGCGGTGAATATGTT 32 >seq3445 Length=233 Score = 131 bits (144), Expect = 5e-28 Identities = 168/234 (72%), Gaps = 22/234 (9%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| | |||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 228 CGCAAGATCGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 169 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||| ||||||||| ||||| || | | | | | Sbjct 168 TAATTCGATAATACGCGCAGACCCTTACCAACTCTTG-------CTAA----TTTTAATA 120 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 || | ||| | | ||||| | ||||||| ||||||||||||||| Sbjct 119 TAAAATTTTATATT-----------AAAAACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 71 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 | |||| ||||| |||||| ||| |||||||||||||| || |||||||| Sbjct 70 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCCTATTATTAGTTGC 17 >seq3447 Length=215 Score = 120 bits (132), Expect = 9e-25 Identities = 157/220 (71%), Gaps = 22/220 (10%) Strand=Plus/Minus Query 21 TCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAAC 80 ||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 214 TCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTTTAATTCGATAATAC 155 Query 81 GCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCT 140 ||| |||||||||| || ||||| || | | | | ||| | ||| | Sbjct 154 GCGCAGAACCTTACAAACTCTTG-------CTAA----TTTTAATATAAAATTTTATATT 106 Query 141 TCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGG 200 | ||||| | ||||||| |||||||||||||||| |||| ||||| | Sbjct 105 -----------AAAAACAGGCGTTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTTG 57 Query 201 GTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||| ||| |||||||||||||| || |||||||| Sbjct 56 GTTAAATCCTTTAACGAGCGCAACCCCTATTATTAGTTGC 17 >seq3446 Length=213 Score = 118 bits (130), Expect = 3e-24 Identities = 156/219 (71%), Gaps = 22/219 (10%) Strand=Plus/Minus Query 22 CAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACG 81 |||||||||||||||| | ||||||||||||||||||||||||||||||| ||| Sbjct 213 CAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTTTAATTCGATAATACG 154 Query 82 CGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTT 141 || |||||||||||| ||||| || | | | | ||| | ||| | Sbjct 153 CGCAGAACCTTACCACCTCTTG-------CTAA----TTTTAATATAAAATTTTATATT- 106 Query 142 CGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGG 201 | ||||| | ||||||| |||||||||||||||| |||| ||||| || Sbjct 105 ----------AAAAACAGGCGTTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTTGG 56 Query 202 TTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||| ||| |||||||||||||| || |||||||| Sbjct 55 TTAAATCCTTTAACGAGCGCAACCCCTATTATTAGTTGC 17 >seq3722 Length=652 Score = 113 bits (124), Expect = 1e-22 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| | |||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 488 CGCAAGATCGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 429 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 |||||||| ||||| ||||||||||||| ||||| Sbjct 428 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG 392 Score = 95.1 bits (104), Expect = 4e-17 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 |||||||| ||| || | || |||||||||| | ||| |||||| | ||||||| Sbjct 119 AGCAAATCTTTAAAAATTATCCT-AGTTCGGATTAAGGGCTGAAACTCGCCCTTATGAAG 61 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTT 492 |||||||||||||||||| ||| ||||||||| ||||||||| ||| Sbjct 60 TTGGAATCGCTAGTAATCGCAGAACAGCATGCTGCGGTGAATATGTT 14 >seq3134 Length=629 Score = 113 bits (124), Expect = 1e-22 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| | |||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 142 CGCAAGATCGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 201 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 |||||||| ||||| ||||||||||||| ||||| Sbjct 202 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG 238 Score = 95.1 bits (104), Expect = 4e-17 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 |||||||| ||| || | || |||||||||| | ||| |||||| | ||||||| Sbjct 511 AGCAAATCTTTAAAAATTATCCT-AGTTCGGATTAAGGGCTGAAACTCGCCCTTATGAAG 569 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTT 492 |||||||||||||||||| ||| ||||||||| ||||||||| ||| Sbjct 570 TTGGAATCGCTAGTAATCGCAGAACAGCATGCTGCGGTGAATATGTT 616 >seq2601 Length=603 Score = 113 bits (124), Expect = 1e-22 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| | |||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 98 CGCAAGATCGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 157 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 |||||||| ||||| ||||||||||||| ||||| Sbjct 158 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG 194 Score = 77.0 bits (84), Expect = 1e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 431 CTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACG 490 |||| | ||||||| |||||||||||||||||| ||| ||||||||| ||||||||| | Sbjct 511 CTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAACAGCATGCTGCGGTGAATATG 570 Query 491 TT 492 || Sbjct 571 TT 572 >seq1743 Length=248 Score = 113 bits (124), Expect = 1e-22 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| | |||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 142 CGCAAGATCGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 201 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 |||||||| ||||| ||||||||||||| ||||| Sbjct 202 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG 238 >seq3753 Length=677 Score = 95.1 bits (104), Expect = 4e-17 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 |||||||| ||| || | || |||||||||| | ||| |||||| | ||||||| Sbjct 559 AGCAAATCTTTAAAAATTATCCT-AGTTCGGATTAAGGGCTGAAACTCGCCCTTATGAAG 617 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTT 492 |||||||||||||||||| ||| ||||||||| ||||||||| ||| Sbjct 618 TTGGAATCGCTAGTAATCGCAGAACAGCATGCTGCGGTGAATATGTT 664 Score = 87.8 bits (96), Expect = 5e-15 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| | |||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 190 CGCAAGATCGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 249 Query 67 TAATTCGAAGCAACGCGAAGA 87 |||||||| ||||| ||| Sbjct 250 TAATTCGATAATACGCGCAGA 270 >seq3721 Length=677 Score = 95.1 bits (104), Expect = 4e-17 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 |||||||| ||| || | || |||||||||| | ||| |||||| | ||||||| Sbjct 119 AGCAAATCTTTAAAAATTATCCT-AGTTCGGATTAAGGGCTGAAACTCGCCCTTATGAAG 61 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTT 492 |||||||||||||||||| ||| ||||||||| ||||||||| ||| Sbjct 60 TTGGAATCGCTAGTAATCGCAGAACAGCATGCTGCGGTGAATATGTT 14 Score = 87.8 bits (96), Expect = 5e-15 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| | |||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 488 CGCAAGATCGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 429 Query 67 TAATTCGAAGCAACGCGAAGA 87 |||||||| ||||| ||| Sbjct 428 TAATTCGATAATACGCGCAGA 408 >seq2996 Length=652 Score = 95.1 bits (104), Expect = 4e-17 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 |||||||| ||| || | || |||||||||| | ||| |||||| | ||||||| Sbjct 534 AGCAAATCTTTAAAAATTATCCT-AGTTCGGATTAAGGGCTGAAACTCGCCCTTATGAAG 592 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTT 492 |||||||||||||||||| ||| ||||||||| ||||||||| ||| Sbjct 593 TTGGAATCGCTAGTAATCGCAGAACAGCATGCTGCGGTGAATATGTT 639 Score = 87.8 bits (96), Expect = 5e-15 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| | |||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 165 CGCAAGATCGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 224 Query 67 TAATTCGAAGCAACGCGAAGA 87 |||||||| ||||| ||| Sbjct 225 TAATTCGATAATACGCGCAGA 245 >seq2304 Length=652 Score = 95.1 bits (104), Expect = 4e-17 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 |||||||| ||| || | || |||||||||| | ||| |||||| | ||||||| Sbjct 534 AGCAAATCTTTAAAAATTATCCT-AGTTCGGATTAAGGGCTGAAACTCGCCCTTATGAAG 592 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTT 492 |||||||||||||||||| ||| ||||||||| ||||||||| ||| Sbjct 593 TTGGAATCGCTAGTAATCGCAGAACAGCATGCTGCGGTGAATATGTT 639 Score = 87.8 bits (96), Expect = 5e-15 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| | |||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 165 CGCAAGATCGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 224 Query 67 TAATTCGAAGCAACGCGAAGA 87 |||||||| ||||| ||| Sbjct 225 TAATTCGATAATACGCGCAGA 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503924408960