Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3595 179 6e-43 seq2214 179 6e-43 seq1940 176 7e-42 seq2971 141 1e-31 seq2448 141 1e-31 seq2764 75.2 2e-11 >seq3595 Length=262 Score = 179 bits (198), Expect = 6e-43 Identities = 110/117 (94%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 254 CTAGTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCA 195 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 194 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAATCTGTC 138 >seq2214 Length=278 Score = 179 bits (198), Expect = 6e-43 Identities = 110/117 (94%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 259 CTAGTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCA 200 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 199 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAATCTGTC 143 >seq1940 Length=225 Score = 176 bits (194), Expect = 7e-42 Identities = 100/102 (98%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 215 AGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 156 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||| |||||||||| Sbjct 155 GCACCACCACCCATAGAATCAAGAAAGAGCTCTCAATCTGTC 114 >seq2971 Length=269 Score = 141 bits (156), Expect = 1e-31 Identities = 93/102 (91%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 149 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGCCCTGTTATTGCCTC 208 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAG 115 ||||||| |||| | || | |||| ||||||||||||||| Sbjct 209 CAACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAG 250 >seq2448 Length=258 Score = 141 bits (156), Expect = 1e-31 Identities = 93/102 (91%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 121 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGGCCTGTTATTGCCTC 62 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAG 115 ||||||| |||| | || | |||| ||||||||||||||| Sbjct 61 CAACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAG 20 >seq2764 Length=289 Score = 75.2 bits (82), Expect = 2e-11 Identities = 41/41 (100%), Gaps = 0/41 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATC 56 ||||||||||||||||||||||||||||||||||||||||| Sbjct 41 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796761204306