Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2957 179 6e-43 seq2928 174 3e-41 seq3195 82.4 1e-13 >seq2957 Length=226 Score = 179 bits (198), Expect = 6e-43 Identities = 116/127 (91%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 226 GCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 167 Query 228 GCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTT 287 |||||||||| | ||||| | | ||||||||||||||||||||| |||||| ||||| Sbjct 166 ACACCTCTAGCTTAAAATTCTAAAGAACTAAAGGATCGATAGGCCACGCTTTCACGGTTT 107 Query 288 GTATTCA 294 ||||||| Sbjct 106 GTATTCA 100 >seq2928 Length=271 Score = 174 bits (192), Expect = 3e-41 Identities = 115/126 (91%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 169 CAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGG 228 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGA 60 Query 229 CACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTG 288 ||||||||| || ||||| | | ||||||||||||||||||||| |||||| |||||| Sbjct 61 CACCTCTAG-CTTAAATTCTAAAGAACTAAAGGATCGATAGGCCACGCTTTCACGGTTTG 119 Query 289 TATTCA 294 |||||| Sbjct 120 TATTCA 125 >seq3195 Length=222 Score = 82.4 bits (90), Expect = 1e-13 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGC 78 |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 175 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGC 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854357057856