Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq3805 123 3e-26 seq1937 123 3e-26 seq3338 120 3e-25 seq2113 120 3e-25 seq3785 93.3 5e-17 >seq3805 Length=267 Score = 123 bits (136), Expect = 3e-26 Identities = 117/152 (77%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTC---CCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCA 79 |||||||||| |||| | || | | |||| |||||||||| |||| | ||| |||| Sbjct 107 CGGGGTCTTTCCGTCTAACTATAGAG---AATCCGCATCTTCACGGATAATTCAAATTCA 163 Query 80 CTGAGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTA 139 ||||| | | ||||||| |||||||||| |||||||||||||||| Sbjct 164 CTGAGTCTATATTGGAGACAGCGGGGATTTCGTTACACCATTCATGCAGGTCGGAACTTA 223 Query 140 CCCGACAAGGAATTTCGCTACCTTAGGACCGT 171 |||||||||||||||||||||||||||||||| Sbjct 224 CCCGACAAGGAATTTCGCTACCTTAGGACCGT 255 >seq1937 Length=263 Score = 123 bits (136), Expect = 3e-26 Identities = 117/152 (77%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTC---CCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCA 79 |||||||||| |||| | || | | |||| |||||||||| |||| | ||| |||| Sbjct 157 CGGGGTCTTTCCGTCTAACTATAGAG---AATCCGCATCTTCACGGATAATTCAAATTCA 101 Query 80 CTGAGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTA 139 ||||| | | ||||||| |||||||||| |||||||||||||||| Sbjct 100 CTGAGTCTATATTGGAGACAGCGGTGATGTCGTTACACCATTCATGCAGGTCGGAACTTA 41 Query 140 CCCGACAAGGAATTTCGCTACCTTAGGACCGT 171 |||||||||||||||||||||||||||||||| Sbjct 40 CCCGACAAGGAATTTCGCTACCTTAGGACCGT 9 >seq3338 Length=275 Score = 120 bits (132), Expect = 3e-25 Identities = 116/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTC---CCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCA 79 |||||||||| |||| | || | | |||| |||||||||| |||| | ||| |||| Sbjct 169 CGGGGTCTTTCCGTCTAACTATAGAG---AATCCGCATCTTCACGGATAATTCAAATTCA 113 Query 80 CTGAGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTA 139 ||||| | | ||||||| ||| |||||| |||||||||||||||| Sbjct 112 CTGAGTCTATATTGGAGACAGCGGGGATGTCGTTACTCCATTCATGCAGGTCGGAACTTA 53 Query 140 CCCGACAAGGAATTTCGCTACCTTAGGACCGT 171 |||||||||||||||||||||||||||||||| Sbjct 52 CCCGACAAGGAATTTCGCTACCTTAGGACCGT 21 >seq2113 Length=273 Score = 120 bits (132), Expect = 3e-25 Identities = 116/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTC---CCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCA 79 |||||||||| |||| | || | | |||| |||||||||| |||| | ||| |||| Sbjct 167 CGGGGTCTTTCCGTCTAACTATAGAG---AATCCGCATCTTCACGGATAATTCAAATTCA 111 Query 80 CTGAGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTA 139 ||||| | | ||||||| | |||||||| |||||||||||||||| Sbjct 110 CTGAGTCTATATTGGAGACAGCGGGGATGTCGTTCCACCATTCATGCAGGTCGGAACTTA 51 Query 140 CCCGACAAGGAATTTCGCTACCTTAGGACCGT 171 |||||||||||||||||||||||||||||||| Sbjct 50 CCCGACAAGGAATTTCGCTACCTTAGGACCGT 19 >seq3785 Length=246 Score = 93.3 bits (102), Expect = 5e-17 Identities = 53/54 (98%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 166 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 219 TACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547173357174