Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1943 114 3e-23 >seq1943 Length=781 Score = 114 bits (126), Expect = 3e-23 Identities = 135/179 (75%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 33 CGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGT 92 ||| |||| |||||||| |||| ||| |||||||||| ||||||||||||||||| Sbjct 460 CGGTATTG-CTGGATCAAGCTTCCGCTCATTGTCCAAAATTCCCCACTGCTGCCT-TTAA 517 Query 93 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGG 152 | ||| ||| |||||||||||| ||| |||| |||||||| || ||| ||||| || | Sbjct 518 AAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAG 577 Query 153 ATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC-TAATCCGACCTAGGCTCATCT 210 || | | |||||| | |||| |||||||| | ||||| || | ||||||| Sbjct 578 ATAATAGGCTTGGTAGTCTATTAAACTACCAACTACCATAATCTTACGCAAACTCATCT 636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071946121280