Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2891 91.5 4e-16 seq1676 87.8 4e-15 seq1657 87.8 4e-15 seq1656 87.8 4e-15 >seq2891 Length=265 Score = 91.5 bits (100), Expect = 4e-16 Identities = 167/236 (71%), Gaps = 18/236 (8%) Strand=Plus/Minus Query 160 CTACGCCTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAG-TCGCTGACCCATTATA 218 |||||||| | |||| |||||||| || | | ||||||| | |||| |||||||| Sbjct 223 CTACGCCTACTTTATTAAATTAAGCTT-GCTA-TAAAAATAAACTTGCTGGCCCATTATG 166 Query 219 CAAAAGGTACGCAGTCACCC---AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTT 275 |||||||||| | ||||| || ||||| ||| | || |||| ||| ||| Sbjct 165 CAAAAGGTACACTGTCACTTTATAAAAAAGT----TCCAATTGATTGTTAACATTAAGTT 110 Query 276 TCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAG 334 |||| || ||||||| | || |||||||| | ||||||| | || ||||| | Sbjct 109 TCAGAAT-TATTTCAAAC-----TCACAAGTTCTTTTTCTCCTTTCCTTTACAGTACTTG 56 Query 335 TTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 390 |||||||||| ||| | | | | | || || |||| ||||||||| ||||||| Sbjct 55 TTCACTATCGATCATTAATTTCT-TAAAGGTTTTGAGGGTGGTCCCCCAATATTCA 1 >seq1676 Length=281 Score = 87.8 bits (96), Expect = 4e-15 Identities = 173/246 (70%), Gaps = 19/246 (8%) Strand=Plus/Minus Query 160 CTACGCCTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAG-TCGCTGACCCATTATA 218 |||||||| | |||| |||||||| || | | ||||||| | |||| |||||||| Sbjct 239 CTACGCCTACTTTATTAAATTAAGCTT-GCTA-TAAAAATAAACTTGCTGGCCCATTATG 182 Query 219 CAAAAGGTACGCAGTCACCC---AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTT 275 |||||||||| | ||||| || ||||| ||| | || |||| ||| ||| Sbjct 181 CAAAAGGTACACTGTCACTTTATAAAAAAGT----TCCAATTGATTGTTAACATTAAGTT 126 Query 276 TCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAG 334 |||| || ||||||| | || |||||||| | ||||||| | || || || | Sbjct 125 TCAGAAT-TATTTCAAAC-----TCACAAGTTCTTTTTCACCTTTCCTTTACAGTTCTTG 72 Query 335 TTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACA 394 |||||||||| ||| | | | | | || || |||| ||||||||| ||||||| | | Sbjct 71 TTCACTATCGATCATTAATTTCT-TAAAGGTTTTGAGGGTGGTCCCCCAATATTCA-AAA 14 Query 395 AAGTTT 400 ||| || Sbjct 13 AAGATT 8 >seq1657 Length=289 Score = 87.8 bits (96), Expect = 4e-15 Identities = 173/246 (70%), Gaps = 19/246 (8%) Strand=Plus/Plus Query 160 CTACGCCTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAG-TCGCTGACCCATTATA 218 |||||||| | |||| |||||||| || | | ||||||| | |||| |||||||| Sbjct 11 CTACGCCTACTTTATTAAATTAAGCTT-GCTA-TAAAAATAAACTTGCTGGCCCATTATG 68 Query 219 CAAAAGGTACGCAGTCACCC---AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTT 275 ||||||| || | ||||| || ||||| ||| | || |||| ||| ||| Sbjct 69 CAAAAGGGACACTGTCACTTTATAAAAAAGT----TCCAATTGATTGTTAACATTAAGTT 124 Query 276 TCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAG 334 |||| || ||||||| | || |||||||| | ||||||| | || ||||| | Sbjct 125 TCAGAAT-TATTTCAAAC-----TCACAAGTTCTTTTTCACCTTTCCTTTACAGTACTTG 178 Query 335 TTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACA 394 |||||||||| ||| | | | | | || || |||| ||||||||| ||||||| | | Sbjct 179 TTCACTATCGATCATTAATTTCT-TAAAGGTTTTGAGGGTGGTCCCCCAATATTCA-AAA 236 Query 395 AAGTTT 400 ||| || Sbjct 237 AAGATT 242 >seq1656 Length=289 Score = 87.8 bits (96), Expect = 4e-15 Identities = 173/246 (70%), Gaps = 19/246 (8%) Strand=Plus/Plus Query 160 CTACGCCTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAG-TCGCTGACCCATTATA 218 |||||||| | |||| |||||||| || | | ||||||| | |||| |||||||| Sbjct 11 CTACGCCTACTTTATTAAATTAAGCTT-GCTA-TAAAAATAAACTTGCTGGCCCATTATG 68 Query 219 CAAAAGGTACGCAGTCACCC---AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTT 275 ||||||| || | ||||| || ||||| ||| | || |||| ||| ||| Sbjct 69 CAAAAGGAACACTGTCACTTTATAAAAAAGT----TCCAATTGATTGTTAACATTAAGTT 124 Query 276 TCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAG 334 |||| || ||||||| | || |||||||| | ||||||| | || ||||| | Sbjct 125 TCAGAAT-TATTTCAAAC-----TCACAAGTTCTTTTTCACCTTTCCTTTACAGTACTTG 178 Query 335 TTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACA 394 |||||||||| ||| | | | | | || || |||| ||||||||| ||||||| | | Sbjct 179 TTCACTATCGATCATTAATTTCT-TAAAGGTTTTGAGGGTGGTCCCCCAATATTCA-AAA 236 Query 395 AAGTTT 400 ||| || Sbjct 237 AAGATT 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241537597184