Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq3259 77.0 2e-12 seq2793 77.0 2e-12 seq3573 73.4 2e-11 >seq3259 Length=204 Score = 77.0 bits (84), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 || || |||| || |||| || ||||||| ||||||||||| ||||||||||||||| Sbjct 90 AATTTTTCACCGAGGCATT-CAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAG 33 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||||| ||| ||||||| Sbjct 32 GGACGTAAT-CAATGCAAGCT 13 >seq2793 Length=216 Score = 77.0 bits (84), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 || || |||| || |||| || ||||||| ||||||||||| ||||||||||||||| Sbjct 162 AATTTTTCACCGAGTCATT-CAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAG 105 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||||| ||| ||||||| Sbjct 104 GGACGTAAT-CAATGCAAGCT 85 >seq3573 Length=295 Score = 73.4 bits (80), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 || || |||| || |||| || ||||||| ||||||||||| ||||||||||||||| Sbjct 76 AATTTTTCACCGAGTCATT-CAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAG 19 Query 104 GGACGTAATACAACGCAAG 122 ||||||||| ||| ||||| Sbjct 18 GGACGTAAT-CAATGCAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300785826680