Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1943 113 9e-23 seq1910 93.3 8e-17 seq3433 89.7 1e-15 seq2001 89.7 1e-15 seq3203 84.2 4e-14 >seq1943 Length=781 Score = 113 bits (124), Expect = 9e-23 Identities = 135/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||| | || | | |||||| ||| || |||||||||||||| | ||| | Sbjct 467 GCTGGATCAAGCTTCCGCTCATTGTCCAAAATTCCCCACTGCTGCCTTTAAAAA-AGTTT 525 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||||||||||||||||||||||||| | ||| || ||| || |||| ||| | || Sbjct 526 GGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGG 585 Query 127 CTTGGTGGGCTATTATCTCACCAACTACC-TAATCGGCCGCGAGCCCATCTTTCAGCGAT 185 |||||| | |||||| |||||||||| ||||| ||| | | ||||||| | || | Sbjct 586 CTTGGTAGTCTATTAAACTACCAACTACCATAATCTTACGCAAACTCATCTTTTAACGTT 645 Query 186 A 186 | Sbjct 646 A 646 >seq1910 Length=263 Score = 93.3 bits (102), Expect = 8e-17 Identities = 97/126 (77%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 62 AGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATC 121 ||| ||||||||||||||||||||||||||| | ||| || ||| || |||| ||| Sbjct 3 AGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATA 62 Query 122 GTCGGCTTGGTGGGCTATTATCTCACCAACTACC-TAATCGGCCGCGAGCCCATCTTTCA 180 | |||||||| |||||||| |||||||||| ||||| ||| | | ||||||| | Sbjct 63 ATAGGCTTGGTAGGCTATTAAACTACCAACTACCATAATCTTACGCAAACTCATCTTTTA 122 Query 181 GCGATA 186 || || Sbjct 123 ACGTTA 128 >seq3433 Length=684 Score = 89.7 bits (98), Expect = 1e-15 Identities = 96/126 (76%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 62 AGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATC 121 ||| ||||||||||||||||||||||||||| | ||| || ||| || |||| ||| Sbjct 283 AGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATA 224 Query 122 GTCGGCTTGGTGGGCTATTATCTCACCAACTACC-TAATCGGCCGCGAGCCCATCTTTCA 180 | |||||||| | |||||| |||||||||| ||||| ||| | | ||||||| | Sbjct 223 ATAGGCTTGGTAGTCTATTAAACTACCAACTACCATAATCTTACGCAAACTCATCTTTTA 164 Query 181 GCGATA 186 || || Sbjct 163 ACGTTA 158 >seq2001 Length=684 Score = 89.7 bits (98), Expect = 1e-15 Identities = 96/126 (76%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 62 AGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATC 121 ||| ||||||||||||||||||||||||||| | ||| || ||| || |||| ||| Sbjct 283 AGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATA 224 Query 122 GTCGGCTTGGTGGGCTATTATCTCACCAACTACC-TAATCGGCCGCGAGCCCATCTTTCA 180 | |||||||| | |||||| |||||||||| ||||| ||| | | ||||||| | Sbjct 223 ATAGGCTTGGTAGTCTATTAAACTACCAACTACCATAATCTTACGCAAACTCATCTTTTA 164 Query 181 GCGATA 186 || || Sbjct 163 ACGTTA 158 >seq3203 Length=268 Score = 84.2 bits (92), Expect = 4e-14 Identities = 95/126 (75%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 62 AGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATC 121 ||| ||||||||||||||||||||||||||| | ||| || ||| || |||| ||| Sbjct 261 AGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATA 202 Query 122 GTCGGCTTGGTGGGCTATTATCTCACCAACTACC-TAATCGGCCGCGAGCCCATCTTTCA 180 | ||||| || | |||||| |||||||||| ||||| ||| | | ||||||| | Sbjct 201 ATAGGCTTTGTAGTCTATTAAACTACCAACTACCATAATCTTACGCAAACTCATCTTTTA 142 Query 181 GCGATA 186 || || Sbjct 141 ACGTTA 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998349820416