Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1943 109 1e-21 seq1910 73.4 1e-10 >seq1943 Length=781 Score = 109 bits (120), Expect = 1e-21 Identities = 123/162 (76%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 35 CGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTA 94 ||| || |||| |||| |||| ||| |||||| ||| ||||||||||||||||| | Sbjct 460 CGGTATTGCTGGATCAAGCTTCCGCTCATTGTCCAAAATTCCCCACTGCTGCCTTTAAAA 519 Query 95 GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGA 154 ||| ||| |||||||||||| ||| |||||||| |||| || ||| |||||||| || Sbjct 520 A-AGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGA 578 Query 155 TCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC-TAATC 195 | | | || ||| | | |||| | ||||||| | ||||| Sbjct 579 TAATAGGCTTGGTAGTCTATTAAACTACCAACTACCATAATC 620 >seq1910 Length=263 Score = 73.4 bits (80), Expect = 1e-10 Identities = 77/100 (77%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 97 AGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATC 156 ||| ||| |||||||||||| ||| |||||||| |||| || ||| |||||||| ||| Sbjct 3 AGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATA 62 Query 157 GTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC-TAATC 195 | | || ||| ||| |||| | ||||||| | ||||| Sbjct 63 ATAGGCTTGGTAGGCTATTAAACTACCAACTACCATAATC 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222338562176