Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2322 125 2e-26 seq1943 120 7e-25 seq2224 118 3e-24 seq3753 109 1e-21 seq3721 105 2e-20 seq3134 89.7 1e-15 seq1743 89.7 1e-15 seq3722 86.0 2e-14 seq2996 86.0 2e-14 seq2304 86.0 2e-14 seq3002 80.6 6e-13 >seq2322 Length=709 Score = 125 bits (138), Expect = 2e-26 Identities = 124/158 (78%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 187 TGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGG 246 ||||||| ||| || || | | |||| ||| |||| ||| ||||| ||| ||||||||| Sbjct 4 TGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGACCTATGGCGAAGG 63 Query 247 CGGCTTGCTGG-ACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305 | | |||| | | || ||||||||||| ||||||| |||| ||| ||| |||||| Sbjct 64 CAATTATCTGGGAATATA-CTGACACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTA 122 Query 306 GATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 ||||||| ||||||||| || ||||||||||| | ||| Sbjct 123 GATACCCCGGTAGTCCATGCTGTAAACGATGAGTGCTA 160 >seq1943 Length=781 Score = 120 bits (132), Expect = 7e-25 Identities = 123/158 (78%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 187 TGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGG 246 ||||||| ||| || || | | |||| ||| |||| ||| ||||| ||| ||||||||| Sbjct 212 TGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGACCTATGGCGAAGG 153 Query 247 CGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305 | | |||| | || |||||||||||| ||||||| |||| ||| ||| |||||| Sbjct 152 CAATTATCTGGG-TATATACTGACACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTA 94 Query 306 GATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 ||| ||| ||||||||| || ||||||||||| | ||| Sbjct 93 GATCCCCCGGTAGTCCATGCTGTAAACGATGAGTGCTA 56 >seq2224 Length=206 Score = 118 bits (130), Expect = 3e-24 Identities = 117/149 (79%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 187 TGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGG 246 ||||||| ||| || || | | |||| ||| |||| ||| ||||| ||| ||||||||| Sbjct 59 TGGAATTTCTATTGGAGAGATAAAATACGTTGATAATAGAAGGAAGACCTATGGCGAAGG 118 Query 247 CGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305 | | |||| | || |||||||||||| ||||||| |||| ||| ||| |||||| Sbjct 119 CAATTATCTGGG-TATATACTGACACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTA 177 Query 306 GATACCCTGGTAGTCCACGCCGTAAACGA 334 ||||||| ||||||||| || |||||||| Sbjct 178 GATACCCCGGTAGTCCATGCTGTAAACGA 206 >seq3753 Length=677 Score = 109 bits (120), Expect = 1e-21 Identities = 102/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 218 GATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTA-ACTGACACTGAGG 276 |||| ||| ||||| ||| |||||||||| | |||| | || |||||||||||| Sbjct 3 GATAATAGAAGGAAGACCTATGGCGAAGGCAATTATCTGGG-TATATACTGACACTGAGA 61 Query 277 CTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATG 336 ||||||| |||||||| ||| ||||||||||||| ||||||||| || |||||||||| Sbjct 62 AACGAAAGCTTGGGGAGCGAACGGGATTAGATACCCCGGTAGTCCATGCTGTAAACGATG 121 Query 337 AATACTA 343 | | ||| Sbjct 122 AGTGCTA 128 >seq3721 Length=677 Score = 105 bits (116), Expect = 2e-20 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 218 GATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTA-ACTGACACTGAGG 276 |||| ||| ||||| ||| |||||||||| | |||| | || |||||||||||| Sbjct 675 GATAATAGAAGGAAGACCTATGGCGAAGGCAATTATCTGGG-TATATACTGACACTGAGA 617 Query 277 CTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATG 336 ||||||| |||| ||| ||| ||||||||||||| ||||||||| || |||||||||| Sbjct 616 AACGAAAGCTTGGGAAGCGAACGGGATTAGATACCCCGGTAGTCCATGCTGTAAACGATG 557 Query 337 AATACTA 343 | | ||| Sbjct 556 AGTGCTA 550 >seq3134 Length=629 Score = 89.7 bits (98), Expect = 1e-15 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||| ||||||| |||| ||| ||| ||||||||||||| ||||||||| Sbjct 1 ACTGACACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTAGATACCCCGGTAGTCCAT 60 Query 324 GCCGTAAACGATGA 337 || ||||||||||| Sbjct 61 GCTGTAAACGATGA 74 >seq1743 Length=248 Score = 89.7 bits (98), Expect = 1e-15 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||| ||||||| |||| ||| ||| ||||||||||||| ||||||||| Sbjct 1 ACTGACACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTAGATACCCCGGTAGTCCAT 60 Query 324 GCCGTAAACGATGA 337 || ||||||||||| Sbjct 61 GCTGTAAACGATGA 74 >seq3722 Length=652 Score = 86.0 bits (94), Expect = 2e-14 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||| ||||||| |||| ||| ||| ||||||||||||| || |||||| Sbjct 629 ACTGACACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTAGATACCCCGGGAGTCCAT 570 Query 324 GCCGTAAACGATGAATACTA 343 || ||||||||||| | ||| Sbjct 569 GCTGTAAACGATGAGTGCTA 550 >seq2996 Length=652 Score = 86.0 bits (94), Expect = 2e-14 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||| ||||||| |||| ||| ||| ||||||||||||| || |||||| Sbjct 24 ACTGACACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTAGATACCCCGGAAGTCCAT 83 Query 324 GCCGTAAACGATGAATACTA 343 || ||||||||||| | ||| Sbjct 84 GCTGTAAACGATGAGTGCTA 103 >seq2304 Length=652 Score = 86.0 bits (94), Expect = 2e-14 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||| ||||||| |||| ||| ||| ||||||||||||| || |||||| Sbjct 24 ACTGACACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTAGATACCCCGGCAGTCCAT 83 Query 324 GCCGTAAACGATGAATACTA 343 || ||||||||||| | ||| Sbjct 84 GCTGTAAACGATGAGTGCTA 103 >seq3002 Length=216 Score = 80.6 bits (88), Expect = 6e-13 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 187 TGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGG 246 ||||||| ||| || || | | |||| ||| |||| ||| ||||| || ||||||||| Sbjct 122 TGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGTCCTATGGCGAAGG 63 Query 247 CGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305 | | |||| | || |||||||||||| ||||||| |||| ||| ||| |||||| Sbjct 62 CAATTATCTGGG-TATATACTGACACTGAGAAACGAAAGCTTGGGTAGCGAACGGGATTA 4 Query 306 GAT 308 ||| Sbjct 3 GAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203139527168