Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2971 233 4e-59 seq2448 214 3e-53 seq2764 131 3e-28 seq2003 107 4e-21 seq2793 104 4e-20 >seq2971 Length=269 Score = 233 bits (258), Expect = 4e-59 Identities = 202/250 (81%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | ||||||| |||||||||||||| ||| Sbjct 250 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGGCTG 191 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 190 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATAC 131 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| || |||||||||||||||||| || ||||||| |||||||| | Sbjct 130 AACCTTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGT 71 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | |||| |||||||||| |||||||| ||| ||||||||| || |||| Sbjct 70 TGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGA 11 Query 309 TTACGTCCCT 318 |||||||||| Sbjct 10 TTACGTCCCT 1 >seq2448 Length=258 Score = 214 bits (236), Expect = 3e-53 Identities = 191/239 (80%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | ||||||| |||||||||||||| ||| Sbjct 20 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGCCTG 79 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 80 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATAC 139 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| || |||||||||||||||||| || ||||||| |||||||| | Sbjct 140 AACCTTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGT 199 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||||||| | |||| |||||||||| |||||||| ||| ||||||||| || ||| Sbjct 200 TGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTG 258 >seq2764 Length=289 Score = 131 bits (144), Expect = 3e-28 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATACA 60 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 |||||| || ||| |||||||||||||| || ||||||| |||||||| || Sbjct 61 ACCTTGATCGATAGGACTGGGTAATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGTT 120 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAG 281 |||||| | |||| |||||||||| ||||| Sbjct 121 GCAATTTTCAGTCTTGAACGAGGAATTCCTAG 152 >seq2003 Length=262 Score = 107 bits (118), Expect = 4e-21 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 157 GCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCT 216 |||||||||||||| |||||||| | |||||| || ||||||||||||||| Sbjct 262 GCGCGCTACACTGATGCGTTCAACGAGTATACAACCTTGATCGATAGGTCTGGGTAATCT 203 Query 217 TGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATG 276 ||| || ||| ||| |||||||| |||||||| | |||| |||||||||| Sbjct 202 TGTGAATGCGCATCGGGCTAGGGATAGACTGTTGCAATTTTCAGTCTTGAACGAGGAATT 143 Query 277 CCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| ||| ||||||||| || |||||| Sbjct 142 CCTAGTAAACGCAAGTCATCAGCTTGCATTGATT 109 >seq2793 Length=216 Score = 104 bits (114), Expect = 4e-20 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||||| |||||||| |||||||| | |||| |||||||||| |||||||| || Sbjct 17 TCGTGCTAGGGATAGACTGTTGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAACGA 76 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| || |||||||||||||||||||||||| Sbjct 77 AAGTCATCAGCTTGCATTGATTACGTCCCTGCCCTTTGTA 116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947152393728