Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3586 311 3e-82 seq2121 311 3e-82 seq3708 291 3e-76 seq3444 246 1e-62 seq3569 192 2e-46 seq2856 192 2e-46 seq2122 152 2e-34 seq2928 145 2e-32 seq2636 145 2e-32 seq1713 143 9e-32 seq1875 140 1e-30 seq2957 77.0 1e-11 seq3338 75.2 4e-11 >seq3586 Length=263 Score = 311 bits (344), Expect = 3e-82 Identities = 181/187 (97%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 || ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 263 GGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCA 204 Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 203 CTAGTTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 144 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 143 CCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 84 Query 526 CGTCAAC 532 |||||| Sbjct 83 TGTCAAC 77 >seq2121 Length=263 Score = 311 bits (344), Expect = 3e-82 Identities = 181/187 (97%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 || ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 263 GGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCA 204 Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 203 CTAGTTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 144 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 143 CCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 84 Query 526 CGTCAAC 532 |||||| Sbjct 83 TGTCAAC 77 >seq3708 Length=331 Score = 291 bits (322), Expect = 3e-76 Identities = 269/334 (81%), Gaps = 14/334 (4%) Strand=Plus/Plus Query 82 CGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGC--GAAG-- 137 |||||||||||||||||||||||||| ||||| || || | || || | ||| Sbjct 1 CGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTCACCCAGGCAGAACCC 60 Query 138 GACCTTAACGCCAGAAAATGGTCGGT---GAAGAC---CAGTTCCG-CTTCATTGATTAA 190 || |||| | |||| ||| ||| |||| | ||| | | | |||| | ||| Sbjct 61 GAGCTTACAACTAGAAC-TGGGCGGCCGCGAAGCCACCCAGATGCTACATCATGGTATAA 119 Query 191 GTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCT 250 |||||| ||| | || |||| |||||||||| || | | | |||||||||||||| Sbjct 120 GTAAAACAACATTGAGAGTAGGGGTATTTCACGGACGGCAGAGC--CTCCCACTTATTCT 177 Query 251 ACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC 310 ||||||| ||||||||||||||| ||| ||||||||||||||||||||||| |||||||| Sbjct 178 ACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAGGGNCTTCTTTC 237 Query 311 CCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGA 370 |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 238 CCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGA 297 Query 371 CAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 ||||||||||||| |||||||||||||||||||| Sbjct 298 CAGTGGGAATCTCATTAATCCATTCATGCGCGTC 331 >seq3444 Length=223 Score = 246 bits (272), Expect = 1e-62 Identities = 141/144 (98%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 390 CCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 223 CCATTCATGCGCGTCACTAGTTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 164 Query 450 TTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 163 TTACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGCACTG 104 Query 510 GGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||| ||||||| Sbjct 103 GGCAGAAATCACATTGTGTCAACA 80 >seq3569 Length=232 Score = 192 bits (212), Expect = 2e-46 Identities = 142/165 (86%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 |||| | ||||||||| ||| | || ||||||||||||||| || | | | ||| Sbjct 163 TCATGGCATAAGTAAAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAGAGC--CTC 106 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| Sbjct 105 CCACTTATTCTACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAG 46 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 45 GGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTG 1 >seq2856 Length=232 Score = 192 bits (212), Expect = 2e-46 Identities = 142/165 (86%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 |||| | ||||||||| ||| | || ||||||||||||||| || | | | ||| Sbjct 70 TCATGGGATAAGTAAAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAGAGC--CTC 127 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| Sbjct 128 CCACTTATTCTACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAG 187 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 188 GGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTG 232 >seq2122 Length=234 Score = 152 bits (168), Expect = 2e-34 Identities = 180/237 (76%), Gaps = 14/237 (6%) Strand=Plus/Plus Query 76 ATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGC-- 133 |||||||||||||||||||||||||||||||| ||||| || || | || || | Sbjct 1 ATGTGCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTCACCCAGGCA 60 Query 134 GAAG--GACCTTAACGCCAGAAAATGGTCGGT---GAAGAC---CAGTTCCG-CTTCATT 184 ||| || |||| | |||| ||| ||| |||| | ||| | | | |||| Sbjct 61 GAACCCGAGCTTACACCTAGAAC-TGGGCGGCCGCGAAGCCACCCAGATGCTACATCATG 119 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 | ||||||||| ||| | || ||||||||||||||| || | | | |||||||| Sbjct 120 GTATAAGTAAAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAGAGC--CTCCCACT 177 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 ||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 178 TATTCTACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAGGG 234 >seq2928 Length=271 Score = 145 bits (160), Expect = 2e-32 Identities = 100/113 (88%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 158 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 217 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC 119 |||||||||||||||||||||||||||||||||||||||| ||||| || || Sbjct 218 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCAC 270 >seq2636 Length=205 Score = 145 bits (160), Expect = 2e-32 Identities = 100/113 (88%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 92 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 151 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC 119 |||||||||||||||||||||||||||||||||||||||| ||||| || || Sbjct 152 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCAC 204 >seq1713 Length=229 Score = 143 bits (158), Expect = 9e-32 Identities = 175/232 (75%), Gaps = 14/232 (6%) Strand=Plus/Minus Query 82 CGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGC--GAAG-- 137 |||||||||||||||||||||||||| ||||| || || | || || | ||| Sbjct 229 CGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTCACCCAGGCAGAACCC 170 Query 138 GACCTTAACGCCAGAAAATGGTCGGT---GAAGAC---CAGTTCCG-CTTCATTGATTAA 190 || |||| | |||| ||| ||| |||| | ||| | | | |||| | ||| Sbjct 169 GAGCTTACAACTAGAAC-TGGGCGGCCGCGAAGCCACCCAGATGCTACATCATGGTATAA 111 Query 191 GTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCT 250 |||||| ||| | || ||||||||||||||| || | | | |||||||||||||| Sbjct 110 GTAAAACAACATTGAGAGTAGTGGTATTTCACGGCCGGCAGAGC--CTCCCACTTATTCT 53 Query 251 ACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||||| ||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 52 ACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAGGGT 1 >seq1875 Length=267 Score = 140 bits (154), Expect = 1e-30 Identities = 98/113 (87%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 42 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 101 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC 119 ||||||||||| ||||||||||||||||||||||||||| ||||| || || Sbjct 102 ATTTAACAGATGKSCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCAC 154 >seq2957 Length=226 Score = 77.0 bits (84), Expect = 1e-11 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 67 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 8 Query 67 GTTTAAC 73 |||||| Sbjct 7 ATTTAAC 1 >seq3338 Length=275 Score = 75.2 bits (82), Expect = 4e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| || |||||| ||||||||||| ||| | ||| ||| ||| |||| Sbjct 96 GACAGCGGGGATGTCGTTACTCCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTC 37 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464 ||||||||| || |||| |||||| ||||||||| Sbjct 36 GCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635117814848