Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq3338 150 6e-34 seq2113 141 3e-31 seq3805 134 5e-29 seq3785 132 2e-28 seq1937 132 2e-28 >seq3338 Length=275 Score = 150 bits (166), Expect = 6e-34 Identities = 173/229 (76%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 242 TCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-C 300 |||||| ||| ||||||| | | ||| ||||| ||| | |||| ||||| | | Sbjct 228 TCCCACTTATGCTACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCAC 169 Query 301 GGGGTCTTTTCGTCCTGCCGC-GCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| | | ||| | ||||||| || || | ||| ||||| | Sbjct 168 GGGGTCTTTCCGTCTAACTATAGAGAATCC-GCATCTTCACGGATAATTCAAATTCACTG 110 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | || | | |||||||| ||| |||||||| |||||| ||||||||||||||||||| Sbjct 109 AGTCTATATTGGAGACAGCGGGGATGTCGTTACTCCATTCATGCAGGTCGGAACTTACCC 50 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 ||||||||||||||||||||||||| || | |||||| ||||||||| Sbjct 49 GACAAGGAATTTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTT 1 >seq2113 Length=273 Score = 141 bits (156), Expect = 3e-31 Identities = 170/227 (75%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 242 TCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-C 300 |||||| ||| ||||||| | | ||| ||||| ||| | |||| ||||| | | Sbjct 226 TCCCACTTATGCTACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCAC 167 Query 301 GGGGTCTTTTCGTCCTGCCGC-GCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| | | ||| | ||||||| || || | ||| ||||| | Sbjct 166 GGGGTCTTTCCGTCTAACTATAGAGAATCC-GCATCTTCACGGATAATTCAAATTCACTG 108 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | || | | |||||||| ||| |||||| | |||||| ||||||||||||||||||| Sbjct 107 AGTCTATATTGGAGACAGCGGGGATGTCGTTCCACCATTCATGCAGGTCGGAACTTACCC 48 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGT 466 ||||||||||||||||||||||||| || | |||||| ||||||| Sbjct 47 GACAAGGAATTTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCCGT 1 >seq3805 Length=267 Score = 134 bits (148), Expect = 5e-29 Identities = 163/218 (75%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 242 TCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-C 300 |||||| ||| ||||||| | | ||| ||||| ||| | |||| ||||| | | Sbjct 48 TCCCACTTATGCTACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCAC 107 Query 301 GGGGTCTTTTCGTCCTGCCGC-GCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| | | ||| | ||||||| || || | ||| ||||| | Sbjct 108 GGGGTCTTTCCGTCTAACTATAGAGAATCC-GCATCTTCACGGATAATTCAAATTCACTG 166 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | || | | |||||||| ||| ||||||| |||||| ||||||||||||||||||| Sbjct 167 AGTCTATATTGGAGACAGCGGGGATTTCGTTACACCATTCATGCAGGTCGGAACTTACCC 226 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTAC 457 ||||||||||||||||||||||||| || | |||||| Sbjct 227 GACAAGGAATTTCGCTACCTTAGGACCGTCAGAGTTAC 264 >seq3785 Length=246 Score = 132 bits (146), Expect = 2e-28 Identities = 141/193 (73%), Gaps = 19/193 (10%) Strand=Plus/Minus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 |||||||| ||| |||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 238 GAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATT 179 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCC 490 ||||||||||||| ||| ||||||||||||||| |||| ||| || Sbjct 178 TCGCTACCTTAGGNNNNNNNNNNNTACGGCCGCCGTTTACTGGGACTTCCATTTAATGCG 119 Query 491 TCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCA 550 | | ||| | |||| |||| |||||||||||||||||| |||| Sbjct 118 T-AAACATC------------------TCCTATTAATCTTCCAGCACCGGGCAGGTGTCA 78 Query 551 GTCCGTATACCTC 563 | || ||||| || Sbjct 77 GCCCCTATACATC 65 >seq1937 Length=263 Score = 132 bits (146), Expect = 2e-28 Identities = 162/217 (75%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 242 TCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-C 300 |||||| ||| ||||||| | | ||| ||||| ||| | |||| ||||| | | Sbjct 216 TCCCACTTATGCTACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCAC 157 Query 301 GGGGTCTTTTCGTCCTGCCGC-GCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| | | ||| | ||||||| || || | ||| ||||| | Sbjct 156 GGGGTCTTTCCGTCTAACTATAGAGAATCC-GCATCTTCACGGATAATTCAAATTCACTG 98 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | || | | |||||||| | | |||||||| |||||| ||||||||||||||||||| Sbjct 97 AGTCTATATTGGAGACAGCGGTGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCC 38 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTA 456 ||||||||||||||||||||||||| || | ||||| Sbjct 37 GACAAGGAATTTCGCTACCTTAGGACCGTCAGAGTTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702314437376