Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq3698 125 1e-26 seq3195 120 5e-25 seq2622 111 3e-22 seq3288 100 5e-19 seq3287 100 5e-19 seq2355 96.9 6e-18 seq2713 89.7 8e-16 seq3049 73.4 6e-11 >seq3698 Length=245 Score = 125 bits (138), Expect = 1e-26 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| |||||||| ||||| | |||| || ||| Sbjct 209 GTACGAGAGGAACCGTTGG-TTCAGA-TAATTGGTAACTGCGGTTAGCTGAAAAGCTAGT 152 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 151 GCCGCCAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 94 >seq3195 Length=222 Score = 120 bits (132), Expect = 5e-25 Identities = 99/118 (84%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| |||||||| ||||| | |||| || ||| Sbjct 145 GTACGAGAGGAACCGTTGG-TTCAGA-TAATTGGTAACTGCGGTTAGCTGAAAAGCTAGT 88 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 87 GCCGCCAAGCTTCCATCTGTAGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 30 >seq2622 Length=259 Score = 111 bits (122), Expect = 3e-22 Identities = 84/98 (86%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| |||||||| ||||| | |||| || |||||||| ||||||||||||| Sbjct 259 TTCAGA-TAATTGGTAACTGCGGTTAGCTGAAAAGCTAGTGCCGCCAAGCTACCATCTGT 201 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||||||||||||||||||||||||||||||||||| Sbjct 200 AGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 163 >seq3288 Length=222 Score = 100 bits (110), Expect = 5e-19 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| ||||| | |||| || |||||||| ||||||||||||| ||||||||| Sbjct 1 TTGGTAACTGCGGTTAGCTGAAAAGCTAGTGCCGCCAAGCTACCATCTGTAGGATTATGG 60 Query 91 CTGAACGCCTCTAAGTCAGAATCCATGC 118 |||||||||||||||||||||||||||| Sbjct 61 CTGAACGCCTCTAAGTCAGAATCCATGC 88 >seq3287 Length=215 Score = 100 bits (110), Expect = 5e-19 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| ||||| | |||| || |||||||| ||||||||||||| ||||||||| Sbjct 1 TTGGTAACTGCGGTTAGCTGAAAAGCTAGTGCCGCCAAGCTACCATCTGTAGGATTATGG 60 Query 91 CTGAACGCCTCTAAGTCAGAATCCATGC 118 |||||||||||||||||||||||||||| Sbjct 61 CTGAACGCCTCTAAGTCAGAATCCATGC 88 >seq2355 Length=250 Score = 96.9 bits (106), Expect = 6e-18 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| ||||| | |||| || |||||||| ||||||||||||| ||||||||| Sbjct 1 TTGGTAACTGCGGTTAGCTGAAAAGCTAGTGCCGCCAAGCTACCATCTGTAGGATTATGG 60 Query 91 CTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||||||||||||| |||||||||||| Sbjct 61 CTGAACGCCTCTAAGGCAGAATCCATGC 88 >seq2713 Length=219 Score = 89.7 bits (98), Expect = 8e-16 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 CCGCCAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 57 >seq3049 Length=237 Score = 73.4 bits (80), Expect = 6e-11 Identities = 43/45 (96%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 74 CATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 CATCTGTAGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819160113664