Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000448265.2_202016-06- 02] 5,026 sequences; 39,481,229 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3547 223 1e-55 seq3521 223 1e-55 seq3332 217 4e-54 seq3330 217 4e-54 seq2302 217 4e-54 seq2201 215 2e-53 seq2521 183 9e-44 seq3419 179 1e-42 seq2695 179 1e-42 >seq3547 Length=282 Score = 223 bits (246), Expect = 1e-55 Identities = 173/205 (84%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 306 ATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||| | ||| |||| ||| ||| || ||||||||||||||||| Sbjct 4 ATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTCATGCATGTATTAGCTCTAG 63 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| |||| ||||| |||||||||||||||| | || || ||||||||| |||||| Sbjct 64 AATTACTACGGGGATCCAAGTAGTAAGGTACTATCGAGTAGACTATAACTGATATAATGA 123 Query 421 GCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 ||||||||||||||||| ||| | | || |||||||||||||||||||||||||||||| Sbjct 124 GCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTAGACATGCATGGCTTAATCTTT 183 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||||||||||||||| Sbjct 184 GAGACAAGCGTATGACTACTGGCAG 208 >seq3521 Length=269 Score = 223 bits (246), Expect = 1e-55 Identities = 173/205 (84%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 306 ATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||| | ||| |||| ||| ||| || ||||||||||||||||| Sbjct 4 ATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTCATGCATGTATTAGCTCTAG 63 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| |||| ||||| |||||||||||||||| | || || ||||||||| |||||| Sbjct 64 AATTACTACGGGAATCCAAGTAGTAAGGTACTATCGAGTAGACTATAACTGATATAATGA 123 Query 421 GCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 ||||||||||||||||| ||| | | || |||||||||||||||||||||||||||||| Sbjct 124 GCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTAGACATGCATGGCTTAATCTTT 183 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||||||||||||||| Sbjct 184 GAGACAAGCGTATGACTACTGGCAG 208 >seq3332 Length=243 Score = 217 bits (240), Expect = 4e-54 Identities = 153/172 (89%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 335 GGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA 393 |||| || | ||||||||||||||||||||||| |||| |||||| |||||||||||||| Sbjct 11 GGGTATTCATGCATGTATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTA 70 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTA 452 || | | || ||||||||| ||||||||||||||||||||||| ||| | | || ||| Sbjct 71 TCGAGAAGACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTA 130 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 131 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 182 >seq3330 Length=256 Score = 217 bits (240), Expect = 4e-54 Identities = 153/172 (89%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 335 GGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA 393 |||| || | ||||||||||||||||||||||| |||| |||||| |||||||||||||| Sbjct 11 GGGTATTCATGCATGTATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTA 70 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTA 452 || | | || ||||||||| ||||||||||||||||||||||| ||| | | || ||| Sbjct 71 TCGAGGAGACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTA 130 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 131 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 182 >seq2302 Length=266 Score = 217 bits (240), Expect = 4e-54 Identities = 153/172 (89%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 335 GGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA 393 |||| || | ||||||||||||||||||||||| |||| |||||| ||||||||| |||| Sbjct 21 GGGTATTCATGCATGTATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGAACTA 80 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTA 452 || | || || ||||||||| ||||||||||||||||||||||| ||| | | || ||| Sbjct 81 TCGAGTAGACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTA 140 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 141 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 192 >seq2201 Length=253 Score = 215 bits (238), Expect = 2e-53 Identities = 152/172 (88%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 335 GGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA 393 |||| || | ||||||||||||||||||||||| |||| |||||| ||||||||| |||| Sbjct 21 GGGTATTCATGCATGTATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGGACTA 80 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTA 452 || | || || ||||||||| ||||||||||||||||||||||| ||| | | || ||| Sbjct 81 TCGAGTAGACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTA 140 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 141 TACTTAGACATGCATGKCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 192 >seq2521 Length=237 Score = 183 bits (202), Expect = 9e-44 Identities = 185/235 (79%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 250 GCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC--CCCGAAGG--GCGTTGGTTTTT 304 ||||| || ||||||||||| ||| || | | | ||||||| || ||||||| Sbjct 4 GCGATCCGCACAGTTATTATGACTCAACACAATACCAGCCCGAAGACTGCATTGGTTTCA 63 Query 305 TATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 ||||||||||| ||| |||| ||| ||| || |||||||||||||||| Sbjct 64 -ATCTAATAAATGATACCCGCCCGACAAGCAGTTGGGTATTCATGCATGTATTAGCTCTA 122 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||||||| |||| |||||| |||||||||||||||| | || || ||||||||| ||||| Sbjct 123 GAATTACTACGGGTATCCAAGTAGTAAGGTACTATCGAGTAGACTATAACTGATATAATG 182 Query 420 AGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTA 473 |||||||||||||||||| ||| | | || |||||||||||||||||||||||| Sbjct 183 AGCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTAGACATGCATGGCTTA 237 >seq3419 Length=213 Score = 179 bits (198), Expect = 1e-42 Identities = 160/197 (81%), Gaps = 9/197 (5%) Strand=Plus/Plus Query 285 CCCGAAGG--GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGG 337 ||||||| || ||||||| ||||||||||| | ||| |||| ||| ||| Sbjct 18 CCCGAAGACTGCATTGGTTTCA-ATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGC 76 Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAA 397 || ||||||||||||||||||||||| |||| |||||| |||||||||||||||| | Sbjct 77 ATTCATGCATGTATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTATCGA 136 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACT 456 || || ||||||||| ||||||||||||||||||||||| ||| | | || ||||||| Sbjct 137 GTAGACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACT 196 Query 457 TAGACATGCATGGCTTA 473 ||||||||||||||||| Sbjct 197 TAGACATGCATGGCTTA 213 >seq2695 Length=213 Score = 179 bits (198), Expect = 1e-42 Identities = 160/197 (81%), Gaps = 9/197 (5%) Strand=Plus/Plus Query 285 CCCGAAGG--GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGG 337 ||||||| || ||||||| ||||||||||| | ||| |||| ||| ||| Sbjct 18 CCCGAAGACTGCATTGGTTTCA-ATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGA 76 Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAA 397 || ||||||||||||||||||||||| |||| |||||| |||||||||||||||| | Sbjct 77 ATTCATGCATGTATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTATCGA 136 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACT 456 || || ||||||||| ||||||||||||||||||||||| ||| | | || ||||||| Sbjct 137 GTAGACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACT 196 Query 457 TAGACATGCATGGCTTA 473 ||||||||||||||||| Sbjct 197 TAGACATGCATGGCTTA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510324087296