Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq261 239 1e-60 >seq261 Length=37974 Score = 239 bits (264), Expect = 1e-60 Identities = 356/499 (71%), Gaps = 37/499 (7%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| | |||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1610 CGCAAGATCGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 1551 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | || | | Sbjct 1550 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAAT---TTTA-ATA 1502 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 || | ||| | | | ||||| | ||||||| ||||||||||||||| Sbjct 1501 TAAAATTTTATATTA--------AAA---ACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 1453 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA--TC 244 | |||| ||||| |||||| ||| |||||||||||||| || |||||||| | | Sbjct 1452 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCCTATTATTAGTTGCTAATTT 1393 Query 245 ATTA------AGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 |||| | ||||||||| | ||| | ||||||||||| Sbjct 1392 ATTATAAAAAATAAAAGCACTCTAATAAAAAAATTAATGATAGGTTAATGGAAGGTGGGG 1333 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | |||||||| || ||||| ||||||||| ||||||||||||||||||||||| || ||| Sbjct 1332 ATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAAT-GATAAT 1274 Query 359 -ACAAAGGGCAGCGAAACCG----CGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTT 413 |||| | | ||| | | | | | |||||||| ||| || | || |||| Sbjct 1273 CACAATGAGAAGCAATAATGATTAAAAATTGGAGCAAATCTTTAAAAATTATCCT-AGTT 1215 Query 414 CGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC 473 |||||| | ||| |||||| | ||||||| |||||||||||||||||| ||| |||| Sbjct 1214 CGGATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAACAGC 1155 Query 474 ATGCTACGGTGAATACGTT 492 ||||| ||||||||| ||| Sbjct 1154 ATGCTGCGGTGAATATGTT 1136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503968867200