Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq261 93.3 1e-16 >seq261 Length=37974 Score = 93.3 bits (102), Expect = 1e-16 Identities = 249/361 (69%), Gaps = 26/361 (7%) Strand=Plus/Plus Query 46 GTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCC 105 ||||| ||||||| |||| ||||| | |||||| ||| ||| || |||||| | | Sbjct 22465 GTTCGATCCTCCAAATAGTT-TTACCTATT-TTTCAATCTGTTCAT-GGTTAGATCACTC 22521 Query 106 GGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGT-AAGACTCGCTTTTCGCTACG 164 ||||| ||||||| || | |||| | || | || ||| | || ||||| Sbjct 22522 GGTTT-CGGGTCTTATTTTTATA-ACTATATTAGCTTTTTAAAACTTGAATTAT-CTACG 22578 Query 165 CCTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAG-TCGCTGACCCATTATACAAAA 223 ||| | |||| |||||||| || | | ||||||| | |||| |||||||| ||||| Sbjct 22579 CCTACTTTATTAAATTAAGCTT-GCTA-TAAAAATAAACTTGCTGGCCCATTATGCAAAA 22636 Query 224 GGTACGCAGTCACCC---AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGG 280 ||||| | ||||| || ||||| ||| | || |||| ||| ||||||| Sbjct 22637 GGTACACTGTCACTTTATAAAAAAGT----TCCAATTGATTGTTAACATTAAGTTTCAGA 22692 Query 281 ATCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAGTTCAC 339 || ||||||| | || |||||||| | ||||||| | || ||||| |||||| Sbjct 22693 AT-TATTTCAAAC-----TCACAAGTTCTTTTTCACCTTTCCTTTACAGTACTTGTTCAC 22746 Query 340 TATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTT 399 ||||| ||| | | | | | || || |||| ||||||||| ||||||| | |||| | Sbjct 22747 TATCGATCATTAATTTCT-TAAAGGTTTTGAGGGTGGTCCCCCAATATTCA-AAAAAGAT 22804 Query 400 T 400 | Sbjct 22805 T 22805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241574298880