Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785725.2_202015-10- 23] 2,070 sequences; 36,712,010 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq261 159 1e-36 >seq261 Length=37974 Score = 159 bits (176), Expect = 1e-36 Identities = 313/453 (69%), Gaps = 15/453 (3%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 |||||||||||| ||||||||| ||||| ||| |||| ||||| || |||| Sbjct 22533 AGACCCGAAACCGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTATTTGGA 22474 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 22473 GGATCGAACTCACATATGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 22414 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || |||||| ||| |||||||||| || ||||| ||||| | |||| || | | ||| Sbjct 22413 AATCAAACTCGGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAATC 22354 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 | ||||||||||||| | |||||||||| | |||||| || ||| Sbjct 22353 TTTTTTTGGGGTAGAGCACTCATTGAGCTAGGGGGT-GTAAAAACTTACTGAATTCTTGG 22295 Query 274 AAACTCCGAATGCGCATCA--GT--TTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 ||||||||||| | | | || |||| || || | || ||||||||| Sbjct 22294 AAACTCCGAATACAAAAAAACGTAATTTA----AATAGACAGACATTAGGCGCTAAGGTC 22239 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGCCCCGAAATGACA-GCTAAG 387 | | ||||| || | || || | ||| ||||||| | | |||| | | ||||| Sbjct 22238 TATTGTCAAGAGGGAAACAGCCCAGATTGATC-GCTAAGGTCTCTAAATAATATTCTAAG 22180 Query 388 TTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTC 447 | ||| || ||||| | || ||| | || | || |||||||||||||||| || Sbjct 22179 TGAAA--AAGGAAGTGAAAAAATTATTACAACCAGTAGGTAGGCTTGGAAGCAGCCA-TC 22123 Query 448 ATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||| |||||| |||||| | ||| || Sbjct 22122 CTTTAAAGAAAGCGTAATAGCTCATTGGTCTAG 22090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689565025280