Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq247 226 9e-57 >seq247 Length=37968 Score = 226 bits (250), Expect = 9e-57 Identities = 257/337 (76%), Gaps = 7/337 (2%) Strand=Plus/Minus Query 167 GATTA-GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 ||||| | ||||||||| ||| | ||||||| | | ||| |||| | ||| | Sbjct 2232 GATTATGGTAGTTGGTAGTTTAATAGACTACCAAGCCTATTATCTTTAGCTGGTTTGAAA 2173 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 | ||||| |||||||||| |||||||||||| ||||||| | |||||||||||| Sbjct 2172 GAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAGCAGTGG 2114 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-C 344 ||||| ||| |||||| || |||| |||| |||||| ||| ||||| || |||||| Sbjct 2113 GGAATTTTGGACAATGAGCGGAAGCTTGATCCAGCAATACCGAGTGAGTGAAGAAGGCTA 2054 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404 | ||| ||||| |||| || | ||||| || |||||| |||||| | | |||| || Sbjct 2053 ATTAGGTTGTAAAACTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGAAGTTCC 1994 Query 405 GGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||| || |||||||||||||||||||||||| || || ||| |||| |||||| Sbjct 1993 GGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCGGAATG 1935 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | | |||||||||||| ||||||||||| |||||| Sbjct 1934 A-TTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGT 1899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497571216128