Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F000785735.2_202015-10- 23] 1,922 sequences; 36,590,891 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq134 259 4e-64 seq213 251 6e-62 >seq134 Length=62988 Score = 259 bits (286), Expect = 4e-64 Identities = 594/881 (67%), Gaps = 15/881 (2%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| | ||||||||| || | | || | |||| |||||||| |||||||| Sbjct 14815 CGCTTCGTGCTATTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 14756 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGG-AGCG 61172 || ||||||||| | ||| ||| | || ||| | ||| | || ||||||| | Sbjct 14755 GCCAGCTTCTGGACTGCGGAAGAGCTGGACTTGGTACACGACCTCAAGGACTGGGGAAAC 14696 Query 61173 TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGA 61232 | | || | || | || ||||| || || || ||||| ||||||||||| || Sbjct 14695 CTCACAGA-CAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGA 14637 Query 61233 CGGTATCGTCAATGAGAATTTA--TTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAG 61290 || ||||| || ||||| | | |||| ||| || | || || || ||| | ||| Sbjct 14636 TGGCATCGTGAACGAGAACCTGGCTATGAAC-TTTAGCA-ATGAAGTACAGGTGCCTGAG 14579 Query 61291 GCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGT 61350 || ||||| |||||||||||||| |||||||| ||||| ||||||| ||| ||||| Sbjct 14578 GCTCGTTGCTTCTACGGCTTCCAAATTGCCATTGAGAACATCCACTCAGAGGTGTACTCG 14519 Query 61351 GTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATC 61410 | ||||| || |||||||||| ||| | ||| || | || | ||| || Sbjct 14518 CTGCTCATTGACACGTACATCAAGGACGCTGTGGAGAAGGACCACCTGCTGCGTGCAATT 14459 Query 61411 GAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAGTAC 61469 ||||| || ||| |||| ||| ||| |||||| | | ||| | ||| | | Sbjct 14458 GAGACCATCCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTAAGATGGTGCGACCCGAA- 14400 Query 61470 AACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAG 61529 | | | ||| || || | ||||||||||| | || ||||| | || ||| Sbjct 14399 AGTGTCCTCATACCCGGAGCGTCTTCTGGCATTTGCAGCTGTGGAGGGAATCTTCTTCTC 14340 Query 61530 TGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTT 61589 || || ||| | | ||||| ||| | ||||| ||||| || ||||| ||||||| ||| Sbjct 14339 GGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTT 14280 Query 61590 CAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATT 61649 | ||| ||| | || || || || || ||||| || |||||| | || | | Sbjct 14279 CTCCAACGAGCTCATTAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTA 14220 Query 61650 CAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGC 61709 | || | ||||||| | | ||||| |||||||| |||||| | ||||| || Sbjct 14219 CT--CGA-AGCTGGTGACCAAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGACGC 14163 Query 61710 GGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAA 61769 || | |||||||| || ||| ||| ||| | | || || || ||||||||||| Sbjct 14162 TGTGAAGATCGAACACGAGTTTGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAA 14103 Query 61770 TTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG--GTCGATTTG 61827 | | || |||| ||||| ||||| || || || ||||| ||| || ||| || Sbjct 14102 CTCGGCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTT-- 14045 Query 61828 GGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTG 61887 ||| || |||||| || || ||||| ||||| | ||||||||||| || || Sbjct 14044 GGTGTGTCCAAGATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTA 13985 Query 61888 GATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 | |||||||| || || |||||||| ||||| ||||| || Sbjct 13984 CAGGGCAAGACTAACTTCTTCGAGAAGCGTGTGGGCGAGTA 13944 >seq213 Length=42570 Score = 251 bits (278), Expect = 6e-62 Identities = 1084/1691 (64%), Gaps = 57/1691 (3%) Strand=Plus/Minus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 ||||||||||| |||||||| || ||| || || || |||||||||| ||| || Sbjct 3035 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATG-TAAGCTT 2977 Query 65183 GCATAAT-TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACC 65241 || | | |||| ||||| | || || |||| ||||||||||||| |||||| ||| Sbjct 2976 GCTTTTTGTCGGTTCGGCGATGTGAATGTTCAGCGACTGACTCTGACAGATGTAGGCACC 2917 Query 65242 ACGATCTGCAGCCATGTCAATGATACGACGTC-CCGATATCTCCCAGACGGTCTTGTAC- 65299 |||||| |||| || ||| | || |||| || | |||||||| || ||||||||| Sbjct 2916 ACGATCCGCAGACAGGTCCA-GAATCGACTTCTGCTTGATCTCCCACACCGTCTTGTACT 2858 Query 65300 ---AGGCGACGT--ACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACC-ACGACGT 65353 || || || ||| | | ||| | | ||| || ||||| || | | Sbjct 2857 TCTCCTTGATGTGGTCCGGAAT--GGAGCTC----ACATTCTGCACCGAACCGCCGTCAT 2804 Query 65354 GCAATAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACC 65413 ||| || | ||||||| | | ||||| ||||| || || || | | | | Sbjct 2803 TCAA-GATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTCATC 2745 Query 65414 AAGTGACGATTGATGAC-TTGG--AACTCGCCGGACAGTACACGACGGACATAGATGTTG 65470 | || || ||| | || ||| ||||| || | || || || ||| || ||||| Sbjct 2744 AGGT-AC--TTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTA 2688 Query 65471 GACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGC 65530 || |||| ||||| | || || | || || || || || || ||||| || || ||| Sbjct 2687 GAGGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGC 2628 Query 65531 ATGGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCG 65590 || || ||||||| | || || |||| |||||| | | | || | | | Sbjct 2627 ATCGGCGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCA 2568 Query 65591 TCCCAGTTCCAC--ATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGG 65648 |||||| |||| | ||| | | || ||| ||||||||| || | | Sbjct 2567 GCCCAGTCCCACAGACCGGAGGA-AGGCG----TGACGTTCCACATATCGAACTGGAAGA 2513 Query 65649 TTCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTT 65708 | || | ||||| || ||||| ||||| | |||||| ||| ||| |||| |||| Sbjct 2512 TACCCTTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCGTGGCCAGTT 2453 Query 65709 GACAGCTG--GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTC 65766 | || ||||| | | || | || ||||||||||| || || || || Sbjct 2452 --CCATTGACGTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTC 2395 Query 65767 ACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTG 65826 ||| ||||| |||||| ||| | |||| |||| |||| ||| || || || || Sbjct 2394 ACGCGCCTCCGGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTG 2335 Query 65827 AACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTA 65886 || |||||||| | ||||| ||||||| |||||| | |||||| || ||||| Sbjct 2334 CACACCAATACCAACAGGACGGTGACGCATGTTGGAATTGCGAGCCTCAATAACGGGGTA 2275 Query 65887 GTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAA 65946 ||| |||| ||||| | |||| |||||||| | ||| | |||| | || Sbjct 2274 GTAGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACATCATACAG 2215 Query 65947 TTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAG 66006 | | | | ||| | || | || | | || |||||||| || Sbjct 2214 CTTCTTGTA--------GTTGAATAC----------GGCGTTCTCAACGAACTTGGGGAG 2173 Query 66007 GGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTC 66066 || | || || | |||||| || || | ||| ||||| | |||||||| | | ||| Sbjct 2172 CGCCACGGACGCCAAGTTGCACACGGCCACCTCATCAGGCGACGTATACTCCATCACTTC 2113 Query 66067 GGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCA 66126 ||||| || || |||| || ||||| | ||||| |||||| |||||| ||| Sbjct 2112 ACAGCACAAGTTGCTCGAGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGC 2053 Query 66127 TGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTG 66186 || |||||||| | |||| | || ||| ||||||| || | || | || ||| Sbjct 2052 GGCGTCCTTGTATAACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAA 1993 Query 66187 CCAAAGAGCGCGTGCCTTCACCGTACGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGT 66245 ||| || | || || | || | | | || | |||| || ||||| | || Sbjct 1992 CCACAGCTGTTGAGCATTGATTGT-CTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAA 1934 Query 66246 AGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACA 66305 | || ||||| || ||||| ||| |||||| ||| || || ||||| | Sbjct 1933 ACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGA 1874 Query 66306 TCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGG 66365 || ||| | |||| || ||||| ||| |||||||| || | ||| || | Sbjct 1873 ACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAG 1814 Query 66366 CGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGA 66425 | ||||| | || ||||| || ||| ||| | || || || ||||||| || | || Sbjct 1813 CATAGAACAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAGATCCAAGA 1754 Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 ||||||| | || || ||||| |||||||| || || || || || ||| | ||||| | Sbjct 1753 ACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTAC 1694 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 | ||||| ||||| ||||| || || || ||| || || |||| ||| || | || | Sbjct 1693 CTCCACCCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGC 1634 Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACA 66604 |||| || ||| || |||||| ||| | | | | || || || || | ||| | | Sbjct 1633 CGTTGGACGAGCCGTTCGTGCCGCGGAT-GTAGCTGTTAGTAGCTCGGATGTTGTGCATA 1575 Query 66605 TTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAAT 66664 | | ||||| || || ||| ||| |||||| ||||| | || || | Sbjct 1574 CTGATGCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAA 1515 Query 66665 ATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTG 66724 ||||| ||||| |||||| ||| |||| || | | |||| ||| | ||| || Sbjct 1514 ATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGT 1455 Query 66725 GGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAA 66784 || || | || ||| || ||||| || ||||| || ||| | | | |||||| Sbjct 1454 GGGGTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGT 1395 Query 66785 TTGTACGTCTC 66795 | ||| ||||| Sbjct 1394 TCGTAAGTCTC 1384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558687218080