Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001707905.1_202016-08- 18] 2,393 sequences; 38,203,779 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq148 98.7 1e-18 >seq148 Length=19971 Score = 98.7 bits (108), Expect = 1e-18 Identities = 168/242 (69%), Gaps = 14/242 (6%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 9310 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 9252 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| || ||| | | | | Sbjct 9251 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTAGTGACACC---------TAATTATTT 9201 Query 127 CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 || | | || | || || |||||||||||| | ||||||||||| |||||| Sbjct 9200 --TTAATAATTAG--GTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTT 9145 Query 187 AACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246 | | ||||| | | | ||||||| | ||| |||| |||||||||||||||| || Sbjct 9144 CAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATTCACCTGTGTCGGTTTAGGG 9085 Query 247 TA 248 || Sbjct 9084 TA 9083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694383902289