Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1209 248 4e-63 seq2407 80.6 1e-12 >seq1209 Length=6842 Score = 248 bits (274), Expect = 4e-63 Identities = 244/316 (77%), Gaps = 38/316 (12%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| | Sbjct 3022 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGA 3081 Query 464 AACCCGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAACC----- 502 ||||| ||||| |||||||||||| || |||| |||| | Sbjct 3082 AACCCAAGCGCGAAATGAAAGTGAAGGGCAGCGCAAGTTGTCTGAGGTAGGAAACGTGTG 3141 Query 503 ------CG----TGAGGGTG-CACCATCGACCGATCCTGATGTCTTCG----GATGGATT 547 || || | ||| ||| ||||||||||| ||| ||||| || |||| Sbjct 3142 GCCTTTCGGGGCTGTGCGTGGCACTATCGACCGATCATGAAC-CTTCGTGGTGAAAGATT 3200 Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||||| ||||| | |||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 3201 TGAGTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAA 3260 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 ||||| ||||||||||||||| ||||| |||| ||||| |||||||||||||||||||| Sbjct 3261 GCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAAC 3320 Query 668 TTGGGTATAGGGGCGA 683 |||||||||||||||| Sbjct 3321 TTGGGTATAGGGGCGA 3336 Score = 181 bits (200), Expect = 4e-43 Identities = 136/160 (85%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 2474 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 2533 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 2534 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 2593 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || |||||||||| || Sbjct 2594 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAACCG 2633 >seq2407 Length=74030 Score = 80.6 bits (88), Expect = 1e-12 Identities = 63/74 (85%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 611 AGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT-CTGGCGTGCAAATCGATCGTCAAATTT 669 || ||||||| || |||| || || |||| || ||| |||||||||||||||||||| || Sbjct 158 AGGGGAAACTATGATGGAAGCCCGTAGCGATTTCTGACGTGCAAATCGATCGTCAAACTT 99 Query 670 GGGTATAGGGGCGA 683 | |||||||||||| Sbjct 98 GAGTATAGGGGCGA 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079939296500