Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2098 136 4e-30 seq1563 77.0 3e-12 >seq2098 Length=34850 Score = 136 bits (150), Expect = 4e-30 Identities = 140/179 (78%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCA 68 |||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||| || Sbjct 4880 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 4821 Query 69 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| ||| || | || | |||||||||| ||||| | ||| ||||| Sbjct 4820 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCA-CACC-AGGGTAAT 4763 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| |||| ||| ||| |||||| | |||| | |||| ||||||||||||||||| Sbjct 4762 GATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGAT 4704 >seq1563 Length=4632 Score = 77.0 bits (84), Expect = 3e-12 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 22 AAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGGAATAATAGA 80 |||||||||||| ||||||||||||| || || ||||| ||||||||||| || Sbjct 110 AAAAAATTAGAGTGTTCAAAGCAGGCAATTCGCCTGAATAATGGTGCATGGAATAATGGA 51 Query 81 ATAGGACGTGCGGTTCTATTTTGTAGGTT 109 ||||||| | |||| ||||||||| |||| Sbjct 50 ATAGGACCT-CGGTACTATTTTGTTGGTT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511987986880