Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq511 228 2e-57 >seq511 Length=37049 Score = 228 bits (252), Expect = 2e-57 Identities = 261/343 (76%), Gaps = 7/343 (2%) Strand=Plus/Plus Query 161 GCGTCTGATTA-GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| ||||| | ||||||||| ||| | ||||||| | | ||| |||| | Sbjct 28534 GCGTAAGATTATGGTAGTTGGTAGTTTAATAGACTACCAAGCCTATTATCTTTAGCTGGT 28593 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 ||| || ||||| |||||||||| |||||||||||| ||||||| | |||||| Sbjct 28594 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAG 28652 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| ||| |||||| || |||| |||| |||||| ||| ||||| || || Sbjct 28653 CAGTGGGGAATTTTGGACAATGAGCGGAAGCTTGATCCAGCAATACCGAGTGAGTGAAGA 28712 Query 340 AGGC-CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGA 398 |||| | ||| ||||| |||| || | ||||| || |||||| |||||| | | || Sbjct 28713 AGGCTAATTAGGTTGTAAAACTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGA 28772 Query 399 AGCCCCGGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 || |||||||| || |||||||||||||||||||||||| || || ||| |||| | Sbjct 28773 AGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTC 28831 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||||| | | |||||||||||| ||||||||||| |||||| Sbjct 28832 GGAATGA-TTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGT 28873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497563728128