Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2405 259 4e-64 seq918 251 6e-62 >seq2405 Length=255098 Score = 259 bits (286), Expect = 4e-64 Identities = 594/881 (67%), Gaps = 15/881 (2%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| | ||||||||| || | | || | |||| |||||||| |||||||| Sbjct 48246 CGCTTCGTGCTATTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 48305 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGG-AGCG 61172 || ||||||||| | ||| ||| | || ||| | ||| | || ||||||| | Sbjct 48306 GCCAGCTTCTGGACTGCGGAAGAGCTGGACTTGGTACACGACCTCAAGGACTGGGGAAAC 48365 Query 61173 TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGA 61232 | | || | || | || ||||| || || || ||||| ||||||||||| || Sbjct 48366 CTCACAGA-CAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGA 48424 Query 61233 CGGTATCGTCAATGAGAATTTA--TTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAG 61290 || ||||| || ||||| | | |||| ||| || | || || || ||| | ||| Sbjct 48425 TGGCATCGTGAACGAGAACCTGGCTATGAAC-TTTAGCA-ATGAAGTACAGGTGCCTGAG 48482 Query 61291 GCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGT 61350 || ||||| |||||||||||||| |||||||| ||||| ||||||| ||| ||||| Sbjct 48483 GCTCGTTGCTTCTACGGCTTCCAAATTGCCATTGAGAACATCCACTCAGAGGTGTACTCG 48542 Query 61351 GTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATC 61410 | ||||| || |||||||||| ||| | ||| || | || | ||| || Sbjct 48543 CTGCTCATTGACACGTACATCAAGGACGCTGTGGAGAAGGACCACCTGCTGCGTGCAATT 48602 Query 61411 GAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAGTAC 61469 ||||| || ||| |||| ||| ||| |||||| | | ||| | ||| | | Sbjct 48603 GAGACCATCCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTAAGATGGTGCGACCCGAA- 48661 Query 61470 AACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAG 61529 | | | ||| || || | ||||||||||| | || ||||| | || ||| Sbjct 48662 AGTGTCCTCATACCCGGAGCGTCTTCTGGCATTTGCAGCTGTGGAGGGAATCTTCTTCTC 48721 Query 61530 TGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTT 61589 || || ||| | | ||||| ||| | ||||| ||||| || ||||| ||||||| ||| Sbjct 48722 GGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTT 48781 Query 61590 CAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATT 61649 | ||| ||| | || || || || || ||||| || |||||| | || | | Sbjct 48782 CTCCAACGAGCTCATTAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTA 48841 Query 61650 CAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGC 61709 | || | ||||||| | | ||||| |||||||| |||||| | ||||| || Sbjct 48842 CT--CGA-AGCTGGTGACCAAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGACGC 48898 Query 61710 GGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAA 61769 || | |||||||| || ||| ||| ||| | | || || || ||||||||||| Sbjct 48899 TGTGAAGATCGAACACGAGTTTGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAA 48958 Query 61770 TTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG--GTCGATTTG 61827 | | || |||| ||||| ||||| || || || ||||| ||| || ||| || Sbjct 48959 CTCGGCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTT-- 49016 Query 61828 GGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTG 61887 ||| || |||||| || || ||||| ||||| | ||||||||||| || || Sbjct 49017 GGTGTGTCCAAGATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTA 49076 Query 61888 GATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 | |||||||| || || |||||||| ||||| ||||| || Sbjct 49077 CAGGGCAAGACTAACTTCTTCGAGAAGCGTGTGGGCGAGTA 49117 >seq918 Length=42645 Score = 251 bits (278), Expect = 6e-62 Identities = 1084/1691 (64%), Gaps = 57/1691 (3%) Strand=Plus/Plus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 ||||||||||| |||||||| || ||| || || || |||||||||| ||| || Sbjct 39608 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATG-TAAGCTT 39666 Query 65183 GCATAAT-TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACC 65241 || | | |||| ||||| | || || |||| ||||||||||||| |||||| ||| Sbjct 39667 GCTTTTTGTCGGTTCGGCGATGTGAATGTTCAGCGACTGACTCTGACAGATGTAGGCACC 39726 Query 65242 ACGATCTGCAGCCATGTCAATGATACGACGTC-CCGATATCTCCCAGACGGTCTTGTAC- 65299 |||||| |||| || ||| | || |||| || | |||||||| || ||||||||| Sbjct 39727 ACGATCCGCAGACAGGTCCA-GAATCGACTTCTGCTTGATCTCCCACACCGTCTTGTACT 39785 Query 65300 ---AGGCGACGT--ACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACC-ACGACGT 65353 || || || ||| | | ||| | | ||| || ||||| || | | Sbjct 39786 TCTCCTTGATGTGGTCCGGAAT--GGAGCTC----ACATTCTGCACCGAACCGCCGTCAT 39839 Query 65354 GCAATAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACC 65413 ||| || | ||||||| | | ||||| ||||| || || || | | | | Sbjct 39840 TCAA-GATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTCATC 39898 Query 65414 AAGTGACGATTGATGAC-TTGG--AACTCGCCGGACAGTACACGACGGACATAGATGTTG 65470 | || || ||| | || ||| ||||| || | || || || ||| || ||||| Sbjct 39899 AGGT-AC--TTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTA 39955 Query 65471 GACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGC 65530 || |||| ||||| | || || | || || || || || || ||||| || || ||| Sbjct 39956 GAGGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGC 40015 Query 65531 ATGGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCG 65590 || || ||||||| | || || |||| |||||| | | | || | | | Sbjct 40016 ATCGGCGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCA 40075 Query 65591 TCCCAGTTCCAC--ATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGG 65648 |||||| |||| | ||| | | || ||| ||||||||| || | | Sbjct 40076 GCCCAGTCCCACAGACCGGAGGA-AGGCG----TGACGTTCCACATATCGAACTGGAAGA 40130 Query 65649 TTCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTT 65708 | || | ||||| || ||||| ||||| | |||||| ||| ||| |||| |||| Sbjct 40131 TACCCTTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCGTGGCCAGTT 40190 Query 65709 GACAGCTG--GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTC 65766 | || ||||| | | || | || ||||||||||| || || || || Sbjct 40191 --CCATTGACGTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTC 40248 Query 65767 ACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTG 65826 ||| ||||| |||||| ||| | |||| |||| |||| ||| || || || || Sbjct 40249 ACGCGCCTCCGGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTG 40308 Query 65827 AACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTA 65886 || |||||||| | ||||| ||||||| |||||| | |||||| || ||||| Sbjct 40309 CACACCAATACCAACAGGACGGTGACGCATGTTGGAATTGCGAGCCTCAATAACGGGGTA 40368 Query 65887 GTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAA 65946 ||| |||| ||||| | |||| |||||||| | ||| | |||| | || Sbjct 40369 GTAGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACATCATACAG 40428 Query 65947 TTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAG 66006 | | | | ||| | || | || | | || |||||||| || Sbjct 40429 CTTCTTGTA--------GTTGAATAC----------GGCGTTCTCAACGAACTTGGGGAG 40470 Query 66007 GGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTC 66066 || | || || | |||||| || || | ||| ||||| | |||||||| | | ||| Sbjct 40471 CGCCACGGACGCCAAGTTGCACACGGCCACCTCATCAGGCGACGTATACTCCATCACTTC 40530 Query 66067 GGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCA 66126 ||||| || || |||| || ||||| | ||||| |||||| |||||| ||| Sbjct 40531 ACAGCACAAGTTGCTCGAGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGC 40590 Query 66127 TGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTG 66186 || |||||||| | |||| | || ||| ||||||| || | || | || ||| Sbjct 40591 GGCGTCCTTGTATAACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAA 40650 Query 66187 CCAAAGAGCGCGTGCCTTCACCGTACGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGT 66245 ||| || | || || | || | | | || | |||| || ||||| | || Sbjct 40651 CCACAGCTGTTGAGCATTGATTGT-CTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAA 40709 Query 66246 AGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACA 66305 | || ||||| || ||||| ||| |||||| ||| || || ||||| | Sbjct 40710 ACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGA 40769 Query 66306 TCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGG 66365 || ||| | |||| || ||||| ||| |||||||| || | ||| || | Sbjct 40770 ACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAG 40829 Query 66366 CGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGA 66425 | ||||| | || ||||| || ||| ||| | || || || ||||||| || | || Sbjct 40830 CATAGAACAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAGATCCAAGA 40889 Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 ||||||| | || || ||||| |||||||| || || || || || ||| | ||||| | Sbjct 40890 ACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTAC 40949 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 | ||||| ||||| ||||| || || || ||| || || |||| ||| || | || | Sbjct 40950 CTCCACCCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGC 41009 Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACA 66604 |||| || ||| || |||||| ||| | | | | || || || || | ||| | | Sbjct 41010 CGTTGGACGAGCCGTTCGTGCCGCGGAT-GTAGCTGTTAGTAGCTCGGATGTTGTGCATA 41068 Query 66605 TTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAAT 66664 | | ||||| || || ||| ||| |||||| ||||| | || || | Sbjct 41069 CTGATGCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAA 41128 Query 66665 ATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTG 66724 ||||| ||||| |||||| ||| |||| || | | |||| ||| | ||| || Sbjct 41129 ATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGT 41188 Query 66725 GGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAA 66784 || || | || ||| || ||||| || ||||| || ||| | | | |||||| Sbjct 41189 GGGGTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGT 41248 Query 66785 TTGTACGTCTC 66795 | ||| ||||| Sbjct 41249 TCGTAAGTCTC 41259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397556264538080