Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq827 239 1e-60 >seq827 Length=6135 Score = 239 bits (264), Expect = 1e-60 Identities = 357/499 (72%), Gaps = 37/499 (7%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| | |||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 3494 CGCAAGATCGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 3435 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | || | | Sbjct 3434 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAAT---TTTA-ATA 3386 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 || | ||| | | | ||||| | ||||||| ||||||||||||||| Sbjct 3385 TAAAATTTTATATTA--------AAA---ACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 3337 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA---- 242 | |||| ||||| |||||| ||| |||||||||||||| || |||||||| | Sbjct 3336 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCCTATTATTAGTTGCTAATTT 3277 Query 243 -TCAT-TAAGTTGG--GCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 | || ||| | ||||||||| | ||| | ||||||||||| Sbjct 3276 ATTATATAAAATAAAAGCACTCTAATAAAAAAATTAATGATAGGTTAATGGAAGGTGGGG 3217 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | |||||||| || ||||| ||||||||| ||||||||||||||||||||||| || ||| Sbjct 3216 ATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAAT-GATAAT 3158 Query 359 -ACAAAGGGCAGCGA----AACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTT 413 |||| | | ||| | | | | | |||||||| ||| || | || |||| Sbjct 3157 CACAATGAGAAGCAATAATGATTGAAAATTGGAGCAAATCTTTAAAAATTATCCT-AGTT 3099 Query 414 CGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC 473 |||||| | ||| |||||| | ||||||| |||||||||||||||||| ||| |||| Sbjct 3098 CGGATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAACAGC 3039 Query 474 ATGCTACGGTGAATACGTT 492 ||||| ||||||||| ||| Sbjct 3038 ATGCTGCGGTGAATATGTT 3020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503971273600