Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq13 271 6e-68 seq250 246 2e-60 >seq13 Length=222908 Score = 271 bits (300), Expect = 6e-68 Identities = 598/883 (68%), Gaps = 19/883 (2%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||||||| || | | || | |||| |||||||| |||||||| Sbjct 45570 CGCTTCGTGCTGTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 45629 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGG-AGCG 61172 || ||||||||| | ||| ||| | || ||| | ||| | || ||||||| | Sbjct 45630 GCCAGCTTCTGGACTGCGGAAGAGCTGGACTTGGTACACGACCTCAAGGACTGGGGAAAC 45689 Query 61173 TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGA 61232 | | || | || | || ||||| || || || ||||| ||||||||||| || Sbjct 45690 CTCACAGA-CAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGA 45748 Query 61233 CGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGG 61288 || ||||| || ||||| || || |||| ||| || | || || |||||| | | Sbjct 45749 TGGCATCGTGAACGAGAACTTGGCCAT--GAAC-TTTAGCA-ATGAAGTACAAGTGCCTG 45804 Query 61289 AGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACA 61348 |||| ||||| ||||||||||||||||||||||| ||||| ||||||| ||| ||||| Sbjct 45805 AGGCTCGTTGCTTCTACGGCTTCCAGATTGCCATTGAGAACATCCACTCAGAGGTGTACT 45864 Query 61349 GTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCA 61408 | ||||| || |||||||||| ||| | |||| || | || | ||| | Sbjct 45865 CGCTGCTCATTGACACGTACATCAAGGACGCTGTGGAAAAGGACCACCTGCTGCGTGCAA 45924 Query 61409 TCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAGT 61467 | ||||| || ||| |||| ||| ||| |||||| | | ||| | ||| | Sbjct 45925 TTGAGACCATCCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTGAGATGGTGCGACCCG- 45983 Query 61468 ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 | | | | ||| || || | |||||||| || | || ||||| | || ||| Sbjct 45984 AAAGTGTCCTCATACCCGGAGCGTCTTCTGGCATTCGCAGCTGTGGAGGGAATCTTCTTC 46043 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || || ||| | | ||||| ||| | ||||| ||||| || ||||| ||||||| | Sbjct 46044 TCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGC 46103 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTA 61647 ||| ||| ||| | || || || || || ||||| || |||||| | || | Sbjct 46104 TTCTCCAACGAGCTCATCAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTG 46163 Query 61648 TTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAG 61707 | | || | ||||||| | | ||||| |||||||| |||||| | ||||| Sbjct 46164 T--ACTCG-AAGCTGGTGACCAAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGAC 46220 Query 61708 GCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATG 61767 || || | |||||||| || || ||| ||| | | || || || ||||||||| Sbjct 46221 GCTGTGAAGATCGAACACGAGTTCGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATG 46280 Query 61768 AATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG--GTCGATT 61825 || | | || |||| ||||| ||||| || || || ||||| ||| || ||| || Sbjct 46281 AACTCGGCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTT 46340 Query 61826 TGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGC 61885 ||| || |||||| || || ||||| ||||| | ||||||||||| || | Sbjct 46341 --GGTGTGTCCAAGATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTC 46398 Query 61886 TGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 | | |||||||| || || |||||||| ||||| ||||| || Sbjct 46399 TACAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 46441 >seq250 Length=44145 Score = 246 bits (272), Expect = 2e-60 Identities = 1085/1688 (64%), Gaps = 51/1688 (3%) Strand=Plus/Plus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 ||||||||||| |||||||| || ||| || || || |||||||||| ||| || Sbjct 40456 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATG-TAAGCTT 40514 Query 65183 GCATAAT-TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACC 65241 || | | |||| ||||| | || || |||| ||||||||||||| |||||| ||| Sbjct 40515 GCTTTTTGTCGGTTCGGCGATGTGAATGTTCAGCGACTGACTCTGACAGATGTAGGCACC 40574 Query 65242 ACGATCTGCAGCCATGTCAATGATACGACGTC-CCGATATCTCCCAGACGGTCTTGTACA 65300 |||||| |||| || ||| | || |||| || | |||||||| || ||||||||| Sbjct 40575 ACGATCCGCAGACAGGTCCA-GAATCGACTTCTGCTTGATCTCCCACACCGTCTTGTAC- 40632 Query 65301 GGCGACGT-ACCTCAATTGGAAT-CTCCTCAATGTCCTGGACTGAACC-ACGACGTGCAA 65357 | | | || | | ||||| ||| | | ||| || ||||| || | | ||| Sbjct 40633 TTCTCCTTGACGTGGTTCGGAATGGAGCTC-ACATTCTGCACCGAACCGCCGTCATTCAA 40691 Query 65358 TAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGT 65417 || | ||||||| | | ||||| ||||| || || || | | | || || Sbjct 40692 -GATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTCATCAGGT 40750 Query 65418 GACGATTGATGAC-TTGG--AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACG 65474 || ||| | || ||| ||||| || | || || || ||| || |||||||| | Sbjct 40751 -AC--TTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTGGAGG 40807 Query 65475 TGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGG 65534 ||| ||||| | || || | || || || || || || ||||| || || ||||| | Sbjct 40808 TGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCG 40867 Query 65535 GAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCC 65594 | ||||||| | || || |||| |||||| | | | || | | | ||| Sbjct 40868 GCGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCAGCCC 40927 Query 65595 AGTTCCAC--ATCGGTTTA--TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTT 65650 ||| |||| | ||| | ||| ||| || ||||||||| || | | | Sbjct 40928 AGTCCCACAGACCGGAGGAAGGCGT-GACGTC------CCACATATCGAACTGGAAGATA 40980 Query 65651 CCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGA 65710 || | ||||| || ||||| ||||| | |||||| ||| ||| |||| |||| Sbjct 40981 CCCTTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCGTGGCCAGTT-C 41039 Query 65711 CAGC-TGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACG 65769 || | ||||| | | || | || ||||||||||| || || || ||||| Sbjct 41040 CATCGACGTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACG 41099 Query 65770 TGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAAC 65829 ||||| |||||| ||| | |||| |||| |||| ||| || || || || || Sbjct 41100 CGCCTCCGGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCAC 41159 Query 65830 TCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTA 65889 |||||||| | ||||| ||||||| |||||| | |||||| || |||||||| Sbjct 41160 ACCAATACCAACAGGACGGTGACGCATGTTGGAATTGCGAGCCTCAATAACGGGGTAGTA 41219 Query 65890 ATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTG 65949 |||| ||||| | |||| |||||||| | ||| | ||| || || | Sbjct 41220 GTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACG--ACCTCATACAGC 41277 Query 65950 TTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGC 66009 ||| | | ||| | || | || | | || |||||||| || || Sbjct 41278 TTC---TTGTA---GTTGAACAC----------GGCGTTCTCAACGAACTTGGGGAGCGC 41321 Query 66010 AAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGT 66069 | || || | |||||| || || | || || || | || ||||| | | ||| Sbjct 41322 CACGGACGCCAAGTTGCACACGGCCACTTCATCGGGCGACGTGTACTCCATCACTTCACA 41381 Query 66070 GCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGC 66129 ||||| || || |||| || ||||| | ||||| || || |||||| ||| || Sbjct 41382 GCACAAGTTGCTCGAGCGAATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGC 41441 Query 66130 ATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCA 66189 |||||||||| |||| | || ||| ||||||| || | || | || ||| ||| Sbjct 41442 GTCCTTGTACAGCATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCA 41501 Query 66190 AAGAGCGCGTGCCTTCACCGTACGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTAGA 66248 || | || || | || | | | || | |||| || ||||| | || | | Sbjct 41502 CAGCTGTTGAGCATTGATTGT-CTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACA 41560 Query 66249 GGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCA 66308 | ||||| || ||||| ||| | |||| ||| || || ||||| | || Sbjct 41561 GCGTCTCGAACTCCTCTCCCCAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACA 41620 Query 66309 GCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGT 66368 ||| | |||| || ||||| ||| || ||||| || | ||| || || | Sbjct 41621 AACTCCACTTGCCATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCAT 41680 Query 66369 AGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACT 66428 |||| | || ||||| || ||| ||| | || || || |||||||| || | ||||| Sbjct 41681 AGAACAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAAATCCAAGAACT 41740 Query 66429 CAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGC 66488 |||| | || || ||||| |||||||| || || || || || ||| | ||||| || | Sbjct 41741 CAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTC 41800 Query 66489 CACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGT 66548 |||| ||||| ||||| || || || ||| || || |||| ||| || | || |||| Sbjct 41801 CACCCTGGTCCACGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGT 41860 Query 66549 TAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTC 66607 | || ||| || |||||| ||| | | | | || || || || | ||| | | | Sbjct 41861 TGGACGAGCCGTTCGTGCCGCGGAT-GTAGCTGTTAGTAGCTCGGATGTTGTGCATACTG 41919 Query 66608 AGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATG 66667 | ||||| || || ||| ||| |||||| ||||| | || || | ||| Sbjct 41920 ATGCCAATGCCTCCCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATG 41979 Query 66668 CCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGT 66727 || ||||| |||||| ||| |||| || | | |||| ||| | ||| || || Sbjct 41980 CCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGA 42039 Query 66728 GTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTG 66787 || | || ||| || ||||| || ||||| || ||| | | | |||||| | | Sbjct 42040 GTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCG 42099 Query 66788 TACGTCTC 66795 || ||||| Sbjct 42100 TAAGTCTC 42107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558745362400