Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1105 248 4e-63 seq106 91.5 6e-16 >seq1105 Length=3119 Score = 248 bits (274), Expect = 4e-63 Identities = 244/316 (77%), Gaps = 38/316 (12%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| | Sbjct 2729 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGA 2788 Query 464 AACCCGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAACC----- 502 ||||| ||||| |||||||||||| || |||| |||| | Sbjct 2789 AACCCAAGCGCGAAATGAAAGTGAAGGGCAGCGCAAGTTGTCTGAGGTAGGAAACGTGTG 2848 Query 503 ------CG----TGAGGGTG-CACCATCGACCGATCCTGATGTCTTCG----GATGGATT 547 || || | ||| ||| ||||||||||| ||| ||||| || |||| Sbjct 2849 GCCTTTCGGGGCTGTGCGTGGCACTATCGACCGATCATGAAC-CTTCGTGGTGAAAGATT 2907 Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||||| ||||| | |||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 2908 TGAGTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAA 2967 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 ||||| ||||||||||||||| ||||| |||| ||||| |||||||||||||||||||| Sbjct 2968 GCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAAC 3027 Query 668 TTGGGTATAGGGGCGA 683 |||||||||||||||| Sbjct 3028 TTGGGTATAGGGGCGA 3043 Score = 181 bits (200), Expect = 4e-43 Identities = 136/160 (85%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 2181 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 2240 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 2241 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 2300 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || |||||||||| || Sbjct 2301 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAACCG 2340 >seq106 Length=80699 Score = 91.5 bits (100), Expect = 6e-16 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 611 AGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTG 670 || ||||||| || |||| || || |||| ||||| |||||||||||||||||||| ||| Sbjct 80551 AGGGGAAACTATGATGGAAGCCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTG 80610 Query 671 GGTATAGGGGCGA 683 ||||||||||||| Sbjct 80611 GGTATAGGGGCGA 80623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079956370700