Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq534 98.7 1e-18 >seq534 Length=15242 Score = 98.7 bits (108), Expect = 1e-18 Identities = 168/242 (69%), Gaps = 14/242 (6%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 4517 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 4459 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| || ||| | | | | Sbjct 4458 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTAGTGACACC---------TAATTATTT 4408 Query 127 CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 || | | || | || || |||||||||||| | ||||||||||| |||||| Sbjct 4407 --TTAATAATTAG--GTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTT 4352 Query 187 AACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246 | | ||||| | | | ||||||| | ||| |||| |||||||||||||||| || Sbjct 4351 CAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATTCACCTGTGTCGGTTTAGGG 4292 Query 247 TA 248 || Sbjct 4291 TA 4290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694386317282