Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq844 75.2 2e-11 >seq844 Length=6061 Score = 75.2 bits (82), Expect = 2e-11 Identities = 156/230 (68%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 67 TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTG 126 |||| ||| | || ||||| ||||||| | | ||||| || |||| | | Sbjct 3845 TTTTCCTCCTTAATGAAAGAGTTTTACAACCTAATTAGCCTTCTTCACTCACTCGGTATT 3904 Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 ||||| ||| || || ||||| |||| ||||| ||||||||||| | ||||| Sbjct 3905 GCTGGATCAAGCTTCCGCTCATTGTCCAAAATTCCCCACTGCTGCCTTTAAAAA-AGTTT 3963 Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246 || |||||||||||| ||||||||| || | | || ||| | | ||| || |||| Sbjct 3964 GGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGG 4023 Query 247 CTAGGTGGGCCGTTACCCCGCCTACTACC-TAATGGAACGCATCCCCATC 295 || ||| | | ||| | || |||||| |||| ||||| | |||| Sbjct 4024 CTTGGTAGTCTATTAAACTACCAACTACCATAATCTTACGCAAACTCATC 4073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068778260608