Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_007189.1 Length=6907 Score E Sequences producing significant alignments: (Bits) Value seq1231 897 0.0 seq1845 765 0.0 >seq1231 Length=2614 Score = 897 bits (994), Expect = 0.0 Identities = 571/617 (93%), Gaps = 5/617 (1%) Strand=Plus/Minus Query 1565 CCCTACCCCCTCTCCCCAAGCCCCAAGAGGACCCGCCAGCGGTCTTGGGGAGCGGCTGGC 1624 ||||||||| ||||||||||||||||| |||||||||||| ||||||| || | |||| Sbjct 613 CCCTACCCC---TCCCCAAGCCCCAAGAGAACCCGCCAGCGGCCTTGGGGTGCCGGTGGC 557 Query 1625 GGG-AGTGCCAAGGATTCCTCGACACCGGGGCGAACTTTAAAGTACCCCTGTACACCCCT 1683 ||| |||| |||||||||||||||||||||| ||||| |||||||||| ||||||||||| Sbjct 556 GGGGAGTGTCAAGGATTCCTCGACACCGGGGTGAACTGTAAAGTACCC-TGTACACCCCT 498 Query 1684 GTCAAGTAGGTATCGAAAATGAGCGCCAGCTACGACCTGTTCTGCCGGTGGAAGCACGTG 1743 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 GTCAAGTAGGTATCGACAATGAGCGCCAGCTACGACCTGTTCTGCCGGTGGAAGCACGTG 438 Query 1744 CAGAAGATCCAGAGCGACAACGCTGGTGCGCTGGCATTGGGCGTGTCCAGGGCCACCGTT 1803 |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| Sbjct 437 CAGAAGATCCAGAGCGACAACGCTGGTGCGCTGGCATTGGGCGTGTCCCGCGCGACCGTT 378 Query 1804 TCCCTCTGGAAACAAGGGAAAAACGCGAAAATCCACTACATCGAGCGGATGGCCGTGGAC 1863 |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 377 TCCCTCTGGAAACAAGGGAAAAACGCAGAAATCCACTACATCGAGCGGATGGCGGTGGAC 318 Query 1864 ATTGGTGACAGCCCGGAAATGTGGTCGGCTGTCGTGATGGCTGAGCGGAGCAATTCCGAG 1923 ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 317 ATTGGCGACAGCCCCGAAATGTGGTCGGCTGTCGTGATGGCCGAGCGGAGCAATTCCGAG 258 Query 1924 GACGAGAAGGCCGCATGGCGCCGAATTGCGCAAAAACTCGCCACGGTGGTCATGGCGCTA 1983 ||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 257 GACGAAAAGGCCGCATGGCGCCGAATTGCGCAGAAACTCGCCACGGTGGCTATGGCGCTA 198 Query 1984 TGCCTGTTCGTGGGTGCCGCCCTACCCCACGACGTGCAGGCTATGCCGCAGGCTGGTAAT 2043 ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 197 TGCCTCTTCGTGGGTGCCGCCCTACCCCGCGACGTGCAGGCTATGCCGCAGGCTGGCAAT 138 Query 2044 GCCTTGCACGATATACATTATGCGAAATCACGTATCCGCCGGATCTGGGCCTTTGTTGGG 2103 |||||||||||||||||||||||||||||| | ||| |||| ||| | ||||| || Sbjct 137 GCCTTGCACGATATACATTATGCGAAATCATGGATCGGCCGAATCCGAGCCTTCGTCTCT 78 Query 2104 TCCGCGTGGCAATGGCTGGGCCTCTGGCTCGGCTCTTGCCTGCGTCCTCAGTCCCCGGCC 2163 ||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct 77 TCCGCTTGGCAATGGCTGGGCCTCTGGCTCGGCTCTTGCCTGCGACCTGGGACCCCGGCC 18 Query 2164 AAGGATGAGATCGCGGC 2180 ||||||||||||||||| Sbjct 17 AAGGATGAGATCGCGGC 1 >seq1845 Length=1196 Score = 765 bits (848), Expect = 0.0 Identities = 722/915 (79%), Gaps = 9/915 (1%) Strand=Plus/Plus Query 2054 ATATACATTATGCGAAATCACGTATCCGCCGGATCTGGGCCTTTGTTGGGTCCGCGTGGC 2113 |||||||||||||||||||| | ||| |||| ||| | ||||| || ||||| |||| Sbjct 1 ATATACATTATGCGAAATCATGGATCGGCCGAATCCGAGCCTTCGTCTCTTCCGCTTGGC 60 Query 2114 AATGGCTGGGCCTCTGGCTCGGCTCTTGCCTGCGTCCTCAGTCCCCGGCCAAGGATGAGA 2173 |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| Sbjct 61 AATGGCTGGGCCTCTGGCTCGGCTCTTGCCTGCGACCTGGGACCCCGGCCAAGGATGAGA 120 Query 2174 TCGCGGCATGATTGAGTTTGACCCGCACCACCGTATCGACTTGACCGGCCCTTGGGCCGG 2233 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 121 TCGCGGCATGATTGAGTTCGACCCGCACCACCGTATTGACTTGACCGGCCCTTGGGCCGG 180 Query 2234 TTTTTCTTTCCTCGGTGATCGTCTGATCACGCCCGAAGGCCGCGAGCTACTTCCTGAAGA 2293 |||||||||||| || || |||||||| |||||||||||||||||| | || || || || Sbjct 181 TTTTTCTTTCCTGGGCGACCGTCTGATTACGCCCGAAGGCCGCGAGTTGCTGCCCGAGGA 240 Query 2294 TCTGGCCTGGCTGTCACTCACCGCCTGCCAAGCGCAGGAATGGCGCCGGATGATGGAAGC 2353 ||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || Sbjct 241 TCTCGCCTGGCTGTCGCTCACTGCCTGCCAAGCGCAGGAATGGCGCCGGATGATGGAGGC 300 Query 2354 TGCACGCTCGGTGCCGTCGATCGACAGTTCCAAGCGTGGTGGCAATCTTCCTGCAGTAAC 2413 |||||||||||| ||||||||||| ||||||| || |||||| || | | Sbjct 301 TGCACGCTCGGTACCGTCGATCGAAAGTTCCAGAAATGTGCGCAATCGCGACGCCGGCAT 360 Query 2414 GTGGGATCGTCCTGCCACTGTCGTCAATCTGCGGGACGTGGTGAGCCGGCGCAAACAGCG 2473 | ||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 361 TCGCCATCATCCTGCCACTGTCGTCAATCTGCGGGACGTTGTGAGCCAGCGCAAACAGCG 420 Query 2474 GTCGGCGGTGGCGATGGCTGGCCCTGACGCCGAGCCACCAGCGGTAGACCTGCCGATACT 2533 |||||||||||||||||||||||||||||||| ||| || || |||||| ||| Sbjct 421 TTCGGCGGTGGCGATGGCTGGCCCTGACGCCGATCCAGTGACGTCAGTCCTGCCAGTACA 480 Query 2534 GGGGCCCATGCCTCGCCAGCGCGTGTGAGGCGCTTCCGTAGGGGCGCTGCCCCTACACCC 2593 |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 481 GGGGCCGAGGCCTCGCCAGCGCGTGTGAGGCGTTTCCGTAGGGGCGCTGCCCCTACACCC 540 Query 2594 CGGATCACTGCTCCCGACAGCGTAACCATCCGCCAGAGCGCGAGGACACCTGTTCCCACC 2653 ||| ||||||||| || ||||| ||| || || | | |||| || ||||||||||| | Sbjct 541 CGG-TCACTGCTCGCGGCAGCGCTGCCAGCCACCTGCGGGCGAAGAAACCTGTTCCCATC 599 Query 2654 CGTTTGGCAGCCTACGCATCGCCTGACCGCCAATGCACGCCATTCCTGAGCGCTTCGCTG 2713 |||| || ||| | || | ||||| ||||| || || || | ||| |||||||| | | Sbjct 600 CGTTGGGGAGCTTTCGGAAGGCCTGGCCGCCGATACAGGCGAGTCCAGAGCGCTTAGAAG 659 Query 2714 CATCAGTACCCATCGCAGGTAGCGTCACCAC---CTCGGTAGATGGACTTGGGCGTCCCG 2770 | || | || | || ||| ||| || || ||| || |||| ||||| || | Sbjct 660 CTTCGGACCCGAGCGAAGGAAGCCCGACGACACTATCG---GAAGGACCAGGGCGACCGG 716 Query 2771 CCTGCCTGGACTCCTGCTG-TAGTGCATTGGCCTCAAGCCCATCACAGAGCGGTTTCATG 2829 || | | | || | ||| || | ||| || || || ||| || || | | Sbjct 717 CCCGGC-GCGCTTCATCTGAAAGCACGCGGGCTTCGAGATGCTCGCAGTACGCCTTTACG 775 Query 2830 CCCGGATGAGGATGGTTCGGCCAGCGGTACTGTTCACAATTGAATGGCGTTGTCGTCTTC 2889 |||||||| || |||||||||||| | | | |||||| | ||||| || ||||| Sbjct 776 CCCGGATGTGGGTGGTTCGGCCAGGCCAATTCGTGACAATTAAGCGGCGTGGTGGTCTTT 835 Query 2890 GCCATCGAGTTATACGCGGCCTTGGGCGCTGCCGGAATTGGCTTTGGCGCTGGCCCCCTC 2949 | ||||||||| || || | ||| || || || || | ||||| ||| ||| || | Sbjct 836 GACATCGAGTTGTAAGCAGGCTTTGGGGCCGCTGGGAGCGGCTTCGGCCTTGGACCGGTA 895 Query 2950 GCTGAATGAATCTGC 2964 || || || | |||| Sbjct 896 GCCGACTGCAGCTGC 910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21986696877896