Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1421 228 1e-57 seq2192 100 5e-19 >seq1421 Length=10067 Score = 228 bits (252), Expect = 1e-57 Identities = 203/250 (81%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 4060 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 4119 Query 130 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| || | || | |||||||||||||||| | ||| |||||| Sbjct 4120 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCAC-ACCAGGGTAATG 4178 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 4179 ATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGATCG 4238 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 | |||| | || |||||||| || ||||||||||||||||||||||| |||||| Sbjct 4239 CTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGA 4297 Query 309 AAGTTAGGGG 318 |||||||||| Sbjct 4298 AAGTTAGGGG 4307 >seq2192 Length=4105 Score = 100 bits (110), Expect = 5e-19 Identities = 86/104 (83%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||||| |||||||||||||||||||||| | |||| | || |||||||| Sbjct 3156 GTATTCAGC-GTCAGAGGTGAAATTCTTGGATCGCTGAAAGATGAGCTTAGGCGAAAGCA 3098 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||||||||||||||||||||| |||||||||||||||| Sbjct 3097 TTTACCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 3055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915149288768