Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1 116 1e-23 >seq1 Length=129477 Score = 116 bits (128), Expect = 1e-23 Identities = 236/344 (69%), Gaps = 16/344 (5%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGT 60 ||| | || || ||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 125483 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 125541 Query 61 GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGAC--AG 118 || ||| ||| ||||||| | | ||||||||| || | ||| |||| | |||| | Sbjct 125542 GCGAGCATTATTCGGAATGATTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGTTGAAA 125601 Query 119 GTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTG----ACTGCACGACTAGAGT 174 | |||| | |||||| | | ||||| | |||| ||| |||| Sbjct 125602 GAAACAAATTAAAG--CTTAACTTTATA----CATTTTTTCAAAACTGATAAACTTGAGT 125655 Query 175 GTGTC-AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAA 233 | ||||| ||||||| | || || | |||| ||| |||| | ||||| Sbjct 125656 ATAAATAGAGGATAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAA 125715 Query 234 CACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGG 293 ||| |||||||||||| ||||| | |||||| || | |||||||| |||| Sbjct 125716 GACCTATGGCGAAGGCAATTATCTGGGTATATACTGACACTGAGAAACGAAAGCTTGGGT 125775 Query 294 AGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||| ||| ||||||||||||| ||||||||| || |||||||| Sbjct 125776 AGCGAACGGGATTAGATACCCCGGTAGTCCATGCTGTAAACGAT 125819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289528543264